PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023916584.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MYB
Protein Properties Length: 321aa    MW: 36304 Da    PI: 7.215
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023916584.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.7e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++++ +G g+W++ ++  g+ R++k+c++rw++yl
   XP_023916584.1 14 RGLWSPEEDEKLINYITAYGHGCWSSLPKLAGLQRCGKSCRLRWLNYL 61
                     788*******************************************97 PP
2Myb_DNA-binding41.43.4e-1367109145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg+++++E  l++++   lG++ W+ Ia+ ++ gRt++++k++w+
   XP_023916584.1  67 RGSFSPQEAALIIELQGILGNK-WAQIAKQLP-GRTDNEVKNFWN 109
                      899*******************.*********.***********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
MRIHSCCNKQ KVKRGLWSPE EDEKLINYIT AYGHGCWSSL PKLAGLQRCG KSCRLRWLNY  60
LKPDLKRGSF SPQEAALIIE LQGILGNKWA QIAKQLPGRT DNEVKNFWNS SIKKKLISHN  120
VHAITTSPDM HYNGNSEESF FSLNTNPSWI LSSQQDPLYL PTPTPMLHGF DHGDLKLHQT  180
NCGANLVQFP TPPPMAPPSN SSFYDPLWSL GYQPHEQFDP NQELQNFSTS GATQHYIGNK  240
RIGPSITAPH YDEDPLSSMI PKPCENISGN CCGMPYLCAS QDLDPLARLP HFPASFDYPH  300
DPYVPNNHME YMDMPSCHHR T
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.23e-74MYB family protein