PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023916406.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 330aa MW: 36832.2 Da PI: 7.0376

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023916406.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0014	4	26	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+++F + L H++ H XP_023916406.1 4 HKCKLCSRTFANGRALGGHMKAH 26 79******************998 PP
2	zf-C2H2	14.7	9.1e-05	265	287	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C+k+F + L H r+H XP_023916406.1 265 FECPYCDKVFGSGQALGGHKRSH 287 89**************9999999 PP

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence
MERHKCKLCS RTFANGRALG GHMKAHLATL PLPPKPQQLV TAEPTTESAS SSPSSSSGEE 60 QEEQQRQREA EEKALVYGLR ENPKKSFRLA DPEFSFAVDA GSVVQDRESE TESKNPTRRR 120 SKRNRKPFIT EGHLSQSQSQ SFELKKSKLT NPSLVESPTE PEPVSSVSDT SPEEDVAMCL 180 MMLSRDIWMK NDEEEHQQQG KEVQRSVKTK VKEPEEVEEI KIKKVRGKHR CEKCSKTFRS 240 FQALGSHKTI CYRDEQGNDA NGRIFECPYC DKVFGSGQAL GGHKRSHLLG SSTTTAHVAV 300 STTLKVETNV LDLNLPAPVE EDDFSVVSDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	7e-42	C2H2 family protein