PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023915057.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family HD-ZIP
Protein Properties Length: 727aa    MW: 79850.4 Da    PI: 5.6417
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023915057.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.41.6e-2059114156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  XP_023915057.1  59 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 114
                     688999***********************************************999 PP
2START2252.3e-702484671206
                     HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                     ela +a++el+++a+ +ep+W++     ++ n+de++++f+++ +     ++ ea+r+++vv+m++ +lve+l+d++ qW++ +     +a+tle
  XP_023915057.1 248 ELAVAAMEELIRMAQMGEPLWMTNLdgtSMINEDEYIRTFPRGIGprpsgFKCEASRETAVVIMNHINLVEILMDVS-QWSTVFSgivsRAMTLE 341
                     57899*************************************999********************************.***************** PP

                     EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
           START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                     v+s+g      galq+m+ae+q++splvp R++++vRy++q+ +g+w++vdvS+d+ ++ p     vR++++pSg+li++++ng+skvtwveh++
  XP_023915057.1 342 VLSTGvagnynGALQVMTAEFQVPSPLVPtRESYYVRYCKQHADGTWAVVDVSLDNLRPSPA----VRCRRRPSGCLIQEMPNGYSKVTWVEHIE 432
                     ***********************************************************995....***************************** PP

                     --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++r +h+l+++lv+sg a+gak+wvatl+rqce+
  XP_023915057.1 433 VDDRGVHNLYKQLVSSGNAFGAKRWVATLDRQCER 467
                     *********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    
MFQPNVMDGQ LHQLDMAQNT SESDLARIRD DEFDSATKSG SENHEGASGD DQDPRPNKKK  60
RYHRHTQHQI QEMEAFFKEC PHPDDKQRKE LSRELGLEPL QVKFWFQNKR TQMKTQHERH  120
ENTNLRTENE KLRADNMRYR EALSNASCPN CGGPTAIGEM SFDEHHLRLE NARLREEIDR  180
ISAIAAKYVG KPVVNYPLLS PPVPTRPLDL GVGSFGGQPG IGGEMYGAGD LLRTINAPTE  240
ADKPMIIELA VAAMEELIRM AQMGEPLWMT NLDGTSMINE DEYIRTFPRG IGPRPSGFKC  300
EASRETAVVI MNHINLVEIL MDVSQWSTVF SGIVSRAMTL EVLSTGVAGN YNGALQVMTA  360
EFQVPSPLVP TRESYYVRYC KQHADGTWAV VDVSLDNLRP SPAVRCRRRP SGCLIQEMPN  420
GYSKVTWVEH IEVDDRGVHN LYKQLVSSGN AFGAKRWVAT LDRQCERLAS AMATSIPTGD  480
IGVITNQEGR KSMLKLAERM VISFCAGVSA STTHTWTTLS GTGADDVRVM TRKSIDDPGR  540
PPGIVLSAAT SFWLPVPPKR VFDFLRDENS RSEWDILSNG GVVQEMAHIA NGRETGNCVS  600
LLRVNSANSS QSNMLILQES CTDPTASFVI YAPVDIVAMN LVLNGGDPDY VALLPSGFAI  660
LPDGTTAHEG GIGEATTSGG SLLTVAFQIL VDSVPTAKLS LGSVATVNNL IACTVERIKA  720
SLSCENA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0HD-ZIP family protein