PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023915054.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family HD-ZIP
Protein Properties Length: 746aa    MW: 82052.1 Da    PI: 5.8695
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023915054.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-2078133156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  XP_023915054.1  78 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 133
                     688999***********************************************999 PP
2START224.92.4e-702674861206
                     HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                     ela +a++el+++a+ +ep+W++     ++ n+de++++f+++ +     ++ ea+r+++vv+m++ +lve+l+d++ qW++ +     +a+tle
  XP_023915054.1 267 ELAVAAMEELIRMAQMGEPLWMTNLdgtSMINEDEYIRTFPRGIGprpsgFKCEASRETAVVIMNHINLVEILMDVS-QWSTVFSgivsRAMTLE 360
                     57899*************************************999********************************.***************** PP

                     EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
           START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                     v+s+g      galq+m+ae+q++splvp R++++vRy++q+ +g+w++vdvS+d+ ++ p     vR++++pSg+li++++ng+skvtwveh++
  XP_023915054.1 361 VLSTGvagnynGALQVMTAEFQVPSPLVPtRESYYVRYCKQHADGTWAVVDVSLDNLRPSPA----VRCRRRPSGCLIQEMPNGYSKVTWVEHIE 451
                     ***********************************************************995....***************************** PP

                     --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++r +h+l+++lv+sg a+gak+wvatl+rqce+
  XP_023915054.1 452 VDDRGVHNLYKQLVSSGNAFGAKRWVATLDRQCER 486
                     *********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    
MILVSVKSRI KFVNPIFLDM FQPNVMDGQL HQLDMAQNTS ESDLARIRDD EFDSATKSGS  60
ENHEGASGDD QDPRPNKKKR YHRHTQHQIQ EMEAFFKECP HPDDKQRKEL SRELGLEPLQ  120
VKFWFQNKRT QMKTQHERHE NTNLRTENEK LRADNMRYRE ALSNASCPNC GGPTAIGEMS  180
FDEHHLRLEN ARLREEIDRI SAIAAKYVGK PVVNYPLLSP PVPTRPLDLG VGSFGGQPGI  240
GGEMYGAGDL LRTINAPTEA DKPMIIELAV AAMEELIRMA QMGEPLWMTN LDGTSMINED  300
EYIRTFPRGI GPRPSGFKCE ASRETAVVIM NHINLVEILM DVSQWSTVFS GIVSRAMTLE  360
VLSTGVAGNY NGALQVMTAE FQVPSPLVPT RESYYVRYCK QHADGTWAVV DVSLDNLRPS  420
PAVRCRRRPS GCLIQEMPNG YSKVTWVEHI EVDDRGVHNL YKQLVSSGNA FGAKRWVATL  480
DRQCERLASA MATSIPTGDI GVITNQEGRK SMLKLAERMV ISFCAGVSAS TTHTWTTLSG  540
TGADDVRVMT RKSIDDPGRP PGIVLSAATS FWLPVPPKRV FDFLRDENSR SEWDILSNGG  600
VVQEMAHIAN GRETGNCVSL LRVNSANSSQ SNMLILQESC TDPTASFVIY APVDIVAMNL  660
VLNGGDPDYV ALLPSGFAIL PDGTTAHEGG IGEATTSGGS LLTVAFQILV DSVPTAKLSL  720
GSVATVNNLI ACTVERIKAS LSCENA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0HD-ZIP family protein