PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023915053.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family HD-ZIP
Protein Properties Length: 755aa    MW: 82522.5 Da    PI: 5.7551
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023915053.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-2087142156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  XP_023915053.1  87 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 142
                     688999***********************************************999 PP
2START224.92.5e-702764951206
                     HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                     ela +a++el+++a+ +ep+W++     ++ n+de++++f+++ +     ++ ea+r+++vv+m++ +lve+l+d++ qW++ +     +a+tle
  XP_023915053.1 276 ELAVAAMEELIRMAQMGEPLWMTNLdgtSMINEDEYIRTFPRGIGprpsgFKCEASRETAVVIMNHINLVEILMDVS-QWSTVFSgivsRAMTLE 369
                     57899*************************************999********************************.***************** PP

                     EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
           START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                     v+s+g      galq+m+ae+q++splvp R++++vRy++q+ +g+w++vdvS+d+ ++ p     vR++++pSg+li++++ng+skvtwveh++
  XP_023915053.1 370 VLSTGvagnynGALQVMTAEFQVPSPLVPtRESYYVRYCKQHADGTWAVVDVSLDNLRPSPA----VRCRRRPSGCLIQEMPNGYSKVTWVEHIE 460
                     ***********************************************************995....***************************** PP

                     --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++r +h+l+++lv+sg a+gak+wvatl+rqce+
  XP_023915053.1 461 VDDRGVHNLYKQLVSSGNAFGAKRWVATLDRQCER 495
                     *********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 755 aa     Download sequence    
MPSGIMIPAS NMPSMIGRNG FGSSSGLTLG QPNVMDGQLH QLDMAQNTSE SDLARIRDDE  60
FDSATKSGSE NHEGASGDDQ DPRPNKKKRY HRHTQHQIQE MEAFFKECPH PDDKQRKELS  120
RELGLEPLQV KFWFQNKRTQ MKTQHERHEN TNLRTENEKL RADNMRYREA LSNASCPNCG  180
GPTAIGEMSF DEHHLRLENA RLREEIDRIS AIAAKYVGKP VVNYPLLSPP VPTRPLDLGV  240
GSFGGQPGIG GEMYGAGDLL RTINAPTEAD KPMIIELAVA AMEELIRMAQ MGEPLWMTNL  300
DGTSMINEDE YIRTFPRGIG PRPSGFKCEA SRETAVVIMN HINLVEILMD VSQWSTVFSG  360
IVSRAMTLEV LSTGVAGNYN GALQVMTAEF QVPSPLVPTR ESYYVRYCKQ HADGTWAVVD  420
VSLDNLRPSP AVRCRRRPSG CLIQEMPNGY SKVTWVEHIE VDDRGVHNLY KQLVSSGNAF  480
GAKRWVATLD RQCERLASAM ATSIPTGDIG VITNQEGRKS MLKLAERMVI SFCAGVSAST  540
THTWTTLSGT GADDVRVMTR KSIDDPGRPP GIVLSAATSF WLPVPPKRVF DFLRDENSRS  600
EWDILSNGGV VQEMAHIANG RETGNCVSLL RVNSANSSQS NMLILQESCT DPTASFVIYA  660
PVDIVAMNLV LNGGDPDYVA LLPSGFAILP DGTTAHEGGI GEATTSGGSL LTVAFQILVD  720
SVPTAKLSLG SVATVNNLIA CTVERIKASL SCENA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0HD-ZIP family protein