PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023914968.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 422aa MW: 45359.5 Da PI: 9.31

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023914968.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.00032	174	196	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C+ Cg++F+ ++L+ H+ + H XP_023914968.1 174 ACSQCGEVFPKVESLELHQAVrH 196 6******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence
MALLTFLPEP SSSSQTKKQH SKRKKKQQKS DKPQQPPSSW DQIKNLLTCK QIEGSKVHDP 60 SKNGTVGTYS KLGSSCSSIC NFKDVVHGNT RVVHRADNSP ESSTVGQETG LLSRKPVTSG 120 SSTRSVSGSS RSNGGATYTS SSKGMQFRKL SGCYECHMIV DPSRYPMPRS TMCACSQCGE 180 VFPKVESLEL HQAVRHAVSE LGPEDSGRNI VEIIFKSSWL KKDNPICKIE RILKVHNTQK 240 TIQRFEDCRD AVKNRALTST RKNPRCAADG NELLRFHCTS LGCTLGARGS SSLCGSVPGC 300 GVCTIIRHGF QGNNNCNKAG GALESKGVRT TASSGRAHDS LVQCTDGRKA MLVCRVIAGK 360 VKRVADDTAA AAAEEESVSA AAACYDSVAG SAGVYSNLED LLVFNPRAIL PCFVVIYKAL 420 DS

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence

MALLTFLPEP SSSSQTKKQH SKRKKKQQKS DKPQQPPSSW DQIKNLLTCK QIEGSKVHDP  60
SKNGTVGTYS KLGSSCSSIC NFKDVVHGNT RVVHRADNSP ESSTVGQETG LLSRKPVTSG  120
SSTRSVSGSS RSNGGATYTS SSKGMQFRKL SGCYECHMIV DPSRYPMPRS TMCACSQCGE  180
VFPKVESLEL HQAVRHAVSE LGPEDSGRNI VEIIFKSSWL KKDNPICKIE RILKVHNTQK  240
TIQRFEDCRD AVKNRALTST RKNPRCAADG NELLRFHCTS LGCTLGARGS SSLCGSVPGC  300
GVCTIIRHGF QGNNNCNKAG GALESKGVRT TASSGRAHDS LVQCTDGRKA MLVCRVIAGK  360
VKRVADDTAA AAAEEESVSA AAACYDSVAG SAGVYSNLED LLVFNPRAIL PCFVVIYKAL  420
DS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-177	C2H2 family protein