PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023914928.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MIKC_MADS

Protein Properties

Length: 231aa MW: 26536.2 Da PI: 9.9136

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023914928.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.7	6.3e-28	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev v+ifsstgklye+ss XP_023914928.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYEFSS 59 8***********************************************96 PP
2	K-box	92.5	7.3e-31	80	168	9	97
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + +++ + +q+e+a L+++++nLq+++R+++Ge+L+ +s+k+Lq+Le+qLe sl+ +R kK+++l+++ieel +k +++++en++L kk XP_023914928.1 80 NPTSEVKFWQREAAMLRQQLQNLQENHRQMMGEELSGMSVKDLQNLENQLEMSLRGVRMKKDQILMDEIEELNRKGNQIHQENMELYKK 168 678899********************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVMIFSS TGKLYEFSST 60 SMKSVIERYN KTKEEHQPGN PTSEVKFWQR EAAMLRQQLQ NLQENHRQMM GEELSGMSVK 120 DLQNLENQLE MSLRGVRMKK DQILMDEIEE LNRKGNQIHQ ENMELYKKKS FGSQVYGTRD 180 ANGANRTSLL LDGLGIGEDP HEPVHLQLSQ PQQQNYETPT RATKLGRLQL Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	1e-105	MIKC_MADS family protein