PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023914064.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

ARF

Protein Properties

Length: 615aa MW: 69706.6 Da PI: 8.1046

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023914064.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	31.2	4e-10	95	136	56	99
TTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 56 sgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++r++lt+GW++Fv a++L +gD ++F + ++++l+v+v+r+ XP_023914064.1 95 PKRHLLTSGWSNFVTAKKLVAGDEFIFL--RGENGQLRVGVRRA 136 578***********************..4489999**996 PP
2	Auxin_resp	109.4	3.7e-36	161	243	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a ha+st+++F+++Y+P++s+seF++++++++k+ ++++s+G+Rf+m+fe+e++se+ ++Gt+vg +d+d +rWp+S+Wr+L+ XP_023914064.1 161 AFHAVSTGTMFTIYYRPWTSPSEFIIPFDQYMKSAENHYSIGTRFRMRFEGEECSEKGYMGTIVGNKDIDCIRWPGSEWRCLE 243 689******************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 615 aa Download sequence
MRCLLKLRCF QWQSKTSQVR RMKMLYFCLR ELVYAPLSRL SLPLTQVRMV DSLFPSAMLL 60 SFSRLWTQLS KHLHRNWLLR TCMAMNGTFA ILIVPKRHLL TSGWSNFVTA KKLVAGDEFI 120 FLRGENGQLR VGVRRAMKQL NSPSVSVISG YSMQHGILAG AFHAVSTGTM FTIYYRPWTS 180 PSEFIIPFDQ YMKSAENHYS IGTRFRMRFE GEECSEKGYM GTIVGNKDID CIRWPGSEWR 240 CLEVQWDVTP DTFLHPERVS PWNIELIEST YKGSTSIISE QNRKRPVNPS SECSCLSRDG 300 LGQYPAEYTC PKHPRVFQGQ DKRNTGAQEL GAQTPEVLPH LVAPSNPNWG HRHLGLENQL 360 CSPMHERLSK CNSNKISYLC KNIAAPCPTH QWHPIITGCG VSDNVAASRN TSVSNVTSSN 420 SGYQECRASE SRDENEALLA PPTGCYRYRL FGVNLFNSYP ELPSPQVATY CELSSPCSVP 480 LTSQSSVCQT IQVSEPSKSI SDVLLDKQCN NCSITNRSCT KVRKYGNALG RSVDLMRFDG 540 YDELISELDH MFDFKGSLIN GSSGWHVTFT DDEEDMMPIG DYPWQEFCLM VRKMLIYPKE 600 EIDRQKPGSP DPTPL

Sequence ? help Back to Top

Protein Sequence Length: 615 aa Download sequence

MRCLLKLRCF QWQSKTSQVR RMKMLYFCLR ELVYAPLSRL SLPLTQVRMV DSLFPSAMLL  60
SFSRLWTQLS KHLHRNWLLR TCMAMNGTFA ILIVPKRHLL TSGWSNFVTA KKLVAGDEFI  120
FLRGENGQLR VGVRRAMKQL NSPSVSVISG YSMQHGILAG AFHAVSTGTM FTIYYRPWTS  180
PSEFIIPFDQ YMKSAENHYS IGTRFRMRFE GEECSEKGYM GTIVGNKDID CIRWPGSEWR  240
CLEVQWDVTP DTFLHPERVS PWNIELIEST YKGSTSIISE QNRKRPVNPS SECSCLSRDG  300
LGQYPAEYTC PKHPRVFQGQ DKRNTGAQEL GAQTPEVLPH LVAPSNPNWG HRHLGLENQL  360
CSPMHERLSK CNSNKISYLC KNIAAPCPTH QWHPIITGCG VSDNVAASRN TSVSNVTSSN  420
SGYQECRASE SRDENEALLA PPTGCYRYRL FGVNLFNSYP ELPSPQVATY CELSSPCSVP  480
LTSQSSVCQT IQVSEPSKSI SDVLLDKQCN NCSITNRSCT KVRKYGNALG RSVDLMRFDG  540
YDELISELDH MFDFKGSLIN GSSGWHVTFT DDEEDMMPIG DYPWQEFCLM VRKMLIYPKE  600
EIDRQKPGSP DPTPL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62000.3	1e-72	ARF family protein