PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023914063.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

ARF

Protein Properties

Length: 716aa MW: 80618.8 Da PI: 6.3991

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023914063.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	76.9	2.2e-24	136	237	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt+sd++++g +++pk++a+e+ ++ ++l+ +d++g +W ++++yr++++r++lt+GW++Fv a++L +gD ++F + + XP_023914063.1 136 FIKTLTTSDTSTHGGFSVPKRHATEFlppldttQQT--PAQELVAKDLHGYEWHFRHTYRGQPKRHLLTSGWSNFVTAKKLVAGDEFIFL--RGE 226 99*************************9975433..3459********************************************..448 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +++l+v+v+r+ XP_023914063.1 227 NGQLRVGVRRA 237 9999**996 PP
2	Auxin_resp	109.1	4.6e-36	262	344	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a ha+st+++F+++Y+P++s+seF++++++++k+ ++++s+G+Rf+m+fe+e++se+ ++Gt+vg +d+d +rWp+S+Wr+L+ XP_023914063.1 262 AFHAVSTGTMFTIYYRPWTSPSEFIIPFDQYMKSAENHYSIGTRFRMRFEGEECSEKGYMGTIVGNKDIDCIRWPGSEWRCLE 344 689******************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 716 aa Download sequence
MGSVAESTER KRRIHTGLLP HSNQGEKDEL YVELWHACAG PLVYIPRAGE RVFYFPQGHM 60 EQVEAYTSED GKMEMPIYNL RSKILCKVVY VQLKAEANTD EVFAQITLLP VAEQDEPSSE 120 DENALFLPQR TGVCSFIKTL TTSDTSTHGG FSVPKRHATE FLPPLDTTQQ TPAQELVAKD 180 LHGYEWHFRH TYRGQPKRHL LTSGWSNFVT AKKLVAGDEF IFLRGENGQL RVGVRRAMKQ 240 LNSPSVSVIS GYSMQHGILA GAFHAVSTGT MFTIYYRPWT SPSEFIIPFD QYMKSAENHY 300 SIGTRFRMRF EGEECSEKGY MGTIVGNKDI DCIRWPGSEW RCLEVQWDVT PDTFLHPERV 360 SPWNIELIES TYKGSTSIIS EQNRKRPVNP SSECSCLSRD GLGQYPAEYT CPKHPRVFQG 420 QDKRNTGAQE LGAQTPEVLP HLVAPSNPNW GHRHLGLENQ LCSPMHERLS KCNSNKISYL 480 CKNIAAPCPT HQWHPIITGC GVSDNVAASR NTSVSNVTSS NSGYQECRAS ESRDENEALL 540 APPTGCYRYR LFGVNLFNSY PELPSPQVAT YCELSSPCSV PLTSQSSVCQ TIQVSEPSKS 600 ISDVLLDKQC NNCSITNRSC TKVRKYGNAL GRSVDLMRFD GYDELISELD HMFDFKGSLI 660 NGSSGWHVTF TDDEEDMMPI GDYPWQEFCL MVRKMLIYPK EEIDRQKPGS PDPTPL

Sequence ? help Back to Top

Protein Sequence Length: 716 aa Download sequence

MGSVAESTER KRRIHTGLLP HSNQGEKDEL YVELWHACAG PLVYIPRAGE RVFYFPQGHM  60
EQVEAYTSED GKMEMPIYNL RSKILCKVVY VQLKAEANTD EVFAQITLLP VAEQDEPSSE  120
DENALFLPQR TGVCSFIKTL TTSDTSTHGG FSVPKRHATE FLPPLDTTQQ TPAQELVAKD  180
LHGYEWHFRH TYRGQPKRHL LTSGWSNFVT AKKLVAGDEF IFLRGENGQL RVGVRRAMKQ  240
LNSPSVSVIS GYSMQHGILA GAFHAVSTGT MFTIYYRPWT SPSEFIIPFD QYMKSAENHY  300
SIGTRFRMRF EGEECSEKGY MGTIVGNKDI DCIRWPGSEW RCLEVQWDVT PDTFLHPERV  360
SPWNIELIES TYKGSTSIIS EQNRKRPVNP SSECSCLSRD GLGQYPAEYT CPKHPRVFQG  420
QDKRNTGAQE LGAQTPEVLP HLVAPSNPNW GHRHLGLENQ LCSPMHERLS KCNSNKISYL  480
CKNIAAPCPT HQWHPIITGC GVSDNVAASR NTSVSNVTSS NSGYQECRAS ESRDENEALL  540
APPTGCYRYR LFGVNLFNSY PELPSPQVAT YCELSSPCSV PLTSQSSVCQ TIQVSEPSKS  600
ISDVLLDKQC NNCSITNRSC TKVRKYGNAL GRSVDLMRFD GYDELISELD HMFDFKGSLI  660
NGSSGWHVTF TDDEEDMMPI GDYPWQEFCL MVRKMLIYPK EEIDRQKPGS PDPTPL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62000.3	1e-157	ARF family protein