PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023914024.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 560aa    MW: 62537.8 Da    PI: 6.6242
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023914024.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS248.92e-761655522374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.....sseelaalkl..fsevs 88 
                     ++lL  cAea+ ++d++++q+lL  l+el+  +gd+++Rla + +eAL +++++ s+s+ +++ ++s+ ++k      ++++++ ++l  f+evs
  XP_023914024.1 165 EQLLNPCAEAIVKNDMSRVQHLLYVLKELRDAKGDANHRLAWHGLEALTKHIFSfSSSTASSSSSTSSIDPKVltfasTDSRIFQQSLikFNEVS 259
                     689***************************************************444444444455555544467764444555555599***** PP

            GRAS  89 PilkfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfA 169
                     P++ f + +aN  Il+ +++e    + +Hi+D+++s+G+QWp+Ll+aL+ R+ ++pps+RiT ++  +++               ++  rL +fA
  XP_023914024.1 260 PWFAFPNNIANASILQILAQEpnrsRNLHILDIGVSHGVQWPTLLEALSRRTgGPPPSVRITIIAXTTENdqnkempfsIGPPGDNYSTRLLNFA 354
                     *******************999888899************************56667*******998777766666665556678999******* PP

            GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh...nsesFlerfleal 261
                     + ++v++++n l    +++l+ + +++ ++E+l+++ +++lh l    ++ ++er+e+L++++s++Pk v+++e+++++   n ++F+++f + +
  XP_023914024.1 355 KLMNVNLQINRLDDYPFQCLNSQVINTVSDETLIICAQFRLHGLD---HNAPDERTEFLRVLRSMEPKGVILSENNMECscnNCGDFAKGFPKRV 446
                     ***********8777*****************************6...77777789*******************9665446778********** PP

            GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveees 355
                     ey + ++ds+++ +    + r   Er+l++ e+ ++++++g +    +e +ekW er++ +GF   +++e+a +  ++llrk++ ++++rvee++
  XP_023914024.1 447 EYLWRFLDSTSSAF----KGRECDERKLMEGEAAKALSNKGVM----NEGKEKWCERMRGVGFVGEAFGEDAIDGGRALLRKYDsNWEMRVEEKD 533
                     **********8886....88889999999999**********9....999**********************************9999******* PP

            GRAS 356 gslvlgWkdrpLvsvSaWr 374
                     +++ l Wk++p+ ++S W+
  XP_023914024.1 534 ACVGLWWKGQPVSFCSLWK 552
                     ******************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    
MTIGELEPNH PTSDQIMDWL NTGTIFPAFM DDSYNSGWWD EGQNISQDLI DTNSTLTYLT  60
NDTANITTSP QSDDPTITNH PSPSDSSKKR KTASDPLPKP SSNHHRKNHS RRISLQAEGG  120
DAAAAVDQKV VTVKKSVGNK RSCNKSTGNN CHNGNNNNKE GRWAEQLLNP CAEAIVKNDM  180
SRVQHLLYVL KELRDAKGDA NHRLAWHGLE ALTKHIFSFS SSTASSSSST SSIDPKVLTF  240
ASTDSRIFQQ SLIKFNEVSP WFAFPNNIAN ASILQILAQE PNRSRNLHIL DIGVSHGVQW  300
PTLLEALSRR TGGPPPSVRI TIIAXTTEND QNKEMPFSIG PPGDNYSTRL LNFAKLMNVN  360
LQINRLDDYP FQCLNSQVIN TVSDETLIIC AQFRLHGLDH NAPDERTEFL RVLRSMEPKG  420
VILSENNMEC SCNNCGDFAK GFPKRVEYLW RFLDSTSSAF KGRECDERKL MEGEAAKALS  480
NKGVMNEGKE KWCERMRGVG FVGEAFGEDA IDGGRALLRK YDSNWEMRVE EKDACVGLWW  540
KGQPVSFCSL WKLDTKSIDS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-158GRAS family protein