PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023913552.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 1632aa MW: 180449 Da PI: 5.6884

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023913552.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.3	0.001	1517	1542	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kC C +sF++k +L H r+ + XP_023913552.1 1517 HKCDleGCRMSFKTKAELLLHKRNrC 1542 789999****************9876 PP
2	zf-C2H2	11	0.0013	1600	1626	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 ykC+ Cg sF+ s++ rH r+ H XP_023913552.1 1600 YKCKveGCGLSFRFVSDYSRHRRKtgH 1626 99*********************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 1632 aa Download sequence
MGNVEIPNWL KGLPLAPEFR PTDTEFADPI AYISKIEKQA SAFGICKIIP PLPKPSKKYV 60 FCNLNKSLSK SPELGSDVNC PGVCSSSKTG SGDGGNDGEA RAVFTTRHQE LGQSVKRTKG 120 AAQSPQLGVH KQVWQSGEIY SLEQFESKSK VFSRSILGMV KEVSPLVVEA MFWKATSEKP 180 IYVEYANDIP GSGFGEPEGQ SRYFHRRRRK RNFYQRSKEN SDCKNNEIDS VTDSLNDEIK 240 DSSAKNEPDI SLETPKPPTT SSTLLSDDTS RCSRRKSSSA INEMEGTAGW KLSNSPWNLQ 300 IIARSPGSLT RFMPDDIPGV TSPMVYIGML FSWFAWHVED HELHSMNFLH TGSAKTWYAV 360 PGDYAFAFEE VIRSEAYGVN IDHLAALTLL GEKTTLLSPE VVVASGIPCC RLVQNPGEFV 420 VTFPRAYHVG FSHGFNCGEA ANFGTPQWLT VAKEAAVRRA AMNYLPMLSH QQLLYLLTMS 480 FVSRVPRSLL PGVRSSRLRD RQKEERELLV KKAFIEDILK ENIKLSNLLG KVSTCHAVLW 540 NADLLPYPSR DSQLPSIVAT DSTSPRENAS HIHTENNNNI QNDLIHEMNL YIETLNDLSL 600 DGDDLSCDFQ VDSGTLACVA CGILGFPFMS VVQPSEEASL KLQPMDHRLV QGGPRVSGPE 660 NACSSPDCDG FIKSNIPENL PPVPDVSLPP KDLKMSLLTK FDTQWNTSSK FLRPRIFCLE 720 HAIEIVELLQ SKGGVNMLMI CHSDYQKMKA HAVAVSEEIG KPFDYNEVPL DTASQEDLNL 780 IDLAIDDEEH DECGEDWTSK LGINLRYCAK VRKNSPSMQV QHALTLGGLF SEKSATSECL 840 TVKWQSRRSR SRKSNHSSHG KVCDTAQSKK DEVLGGRSNG IIVNNEKKLI QYSRRNPKLK 900 LGGSTDASTV DGCPGKNLSK DVSAATYGDR DKQSGKATEN DLSNKGNSKS DAVFVFSNAS 960 GVSEMQHESS GFAATSGGSL NSAPSRIEDS PASDTLVVVE TQSENHTLDD FDIDGKACNV 1020 ATWDGSEMQP KIKSTDETKE EDKTTYAKKC GSPLIIATDE RSGMQAENQS KEKISITNES 1080 FHLVSEGQCN VSTEGDVLMN EVSDLSKPPT PHIADPVVRN FEAQMENVVL EESCINSKVL 1140 VCATLDNEVQ QKIHTTSRIE YDGPLSSNVA PINQLTLAST EGVSCNIAVT NHPTLASMQE 1200 SCEGPTEIRA AEDISIAMSS DAVEQELESE NGSTEDEPVS SYVIPTNEPT ASREIHSPDR 1260 NNEELVSSSV SPMEVSQPCV SLEQCPEVPR GCSAEEDLHD GVTLDTEVQQ DIQTSDGTDE 1320 GMPVPSFITQ VEKEPVTISG GECYKVPRGI NAEENLSGGV ALDNEVEQKK ELTNENDEEF 1380 SEYDTLINPP SPAPIQKRSR IRRDTHVENL LHKEVCSSQD DRELESIEST LLEPRSSTDK 1440 RRKRKREADH LTENKFGCSD FIRSPCEGLR PRAGKDATSR CGIDTSKIVE EKLVRKKVSK 1500 ASDVPLPPKN KNSMGSHKCD LEGCRMSFKT KAELLLHKRN RCPHEGCGKR FSNHKYAMLH 1560 KRVHDDDRPL KCPWKGCTMS FKWAWARTEH IRVHTGERPY KCKVEGCGLS FRFVSDYSRH 1620 RRKTGHYVNS PA

Sequence ? help Back to Top

Protein Sequence Length: 1632 aa Download sequence

MGNVEIPNWL KGLPLAPEFR PTDTEFADPI AYISKIEKQA SAFGICKIIP PLPKPSKKYV  60
FCNLNKSLSK SPELGSDVNC PGVCSSSKTG SGDGGNDGEA RAVFTTRHQE LGQSVKRTKG  120
AAQSPQLGVH KQVWQSGEIY SLEQFESKSK VFSRSILGMV KEVSPLVVEA MFWKATSEKP  180
IYVEYANDIP GSGFGEPEGQ SRYFHRRRRK RNFYQRSKEN SDCKNNEIDS VTDSLNDEIK  240
DSSAKNEPDI SLETPKPPTT SSTLLSDDTS RCSRRKSSSA INEMEGTAGW KLSNSPWNLQ  300
IIARSPGSLT RFMPDDIPGV TSPMVYIGML FSWFAWHVED HELHSMNFLH TGSAKTWYAV  360
PGDYAFAFEE VIRSEAYGVN IDHLAALTLL GEKTTLLSPE VVVASGIPCC RLVQNPGEFV  420
VTFPRAYHVG FSHGFNCGEA ANFGTPQWLT VAKEAAVRRA AMNYLPMLSH QQLLYLLTMS  480
FVSRVPRSLL PGVRSSRLRD RQKEERELLV KKAFIEDILK ENIKLSNLLG KVSTCHAVLW  540
NADLLPYPSR DSQLPSIVAT DSTSPRENAS HIHTENNNNI QNDLIHEMNL YIETLNDLSL  600
DGDDLSCDFQ VDSGTLACVA CGILGFPFMS VVQPSEEASL KLQPMDHRLV QGGPRVSGPE  660
NACSSPDCDG FIKSNIPENL PPVPDVSLPP KDLKMSLLTK FDTQWNTSSK FLRPRIFCLE  720
HAIEIVELLQ SKGGVNMLMI CHSDYQKMKA HAVAVSEEIG KPFDYNEVPL DTASQEDLNL  780
IDLAIDDEEH DECGEDWTSK LGINLRYCAK VRKNSPSMQV QHALTLGGLF SEKSATSECL  840
TVKWQSRRSR SRKSNHSSHG KVCDTAQSKK DEVLGGRSNG IIVNNEKKLI QYSRRNPKLK  900
LGGSTDASTV DGCPGKNLSK DVSAATYGDR DKQSGKATEN DLSNKGNSKS DAVFVFSNAS  960
GVSEMQHESS GFAATSGGSL NSAPSRIEDS PASDTLVVVE TQSENHTLDD FDIDGKACNV  1020
ATWDGSEMQP KIKSTDETKE EDKTTYAKKC GSPLIIATDE RSGMQAENQS KEKISITNES  1080
FHLVSEGQCN VSTEGDVLMN EVSDLSKPPT PHIADPVVRN FEAQMENVVL EESCINSKVL  1140
VCATLDNEVQ QKIHTTSRIE YDGPLSSNVA PINQLTLAST EGVSCNIAVT NHPTLASMQE  1200
SCEGPTEIRA AEDISIAMSS DAVEQELESE NGSTEDEPVS SYVIPTNEPT ASREIHSPDR  1260
NNEELVSSSV SPMEVSQPCV SLEQCPEVPR GCSAEEDLHD GVTLDTEVQQ DIQTSDGTDE  1320
GMPVPSFITQ VEKEPVTISG GECYKVPRGI NAEENLSGGV ALDNEVEQKK ELTNENDEEF  1380
SEYDTLINPP SPAPIQKRSR IRRDTHVENL LHKEVCSSQD DRELESIEST LLEPRSSTDK  1440
RRKRKREADH LTENKFGCSD FIRSPCEGLR PRAGKDATSR CGIDTSKIVE EKLVRKKVSK  1500
ASDVPLPPKN KNSMGSHKCD LEGCRMSFKT KAELLLHKRN RCPHEGCGKR FSNHKYAMLH  1560
KRVHDDDRPL KCPWKGCTMS FKWAWARTEH IRVHTGERPY KCKVEGCGLS FRFVSDYSRH  1620
RRKTGHYVNS PA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1440	1446	KRRKRKR
2	1441	1446	RRKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	0.0	C2H2 family protein