PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023913389.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 546aa    MW: 60782.7 Da    PI: 5.8348
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023913389.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS430.51.3e-1311765461374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+elL++cA+a+s++ +   ++l ++ ++ +s +g+p+qRl ay++e+L ar   s++++y+al+++e +    ++ l+++++++e++P+lkf++
  XP_023913389.1 176 LKELLTACAKALSDNRMDDFDKLTEKARDAVSITGEPIQRLGAYMVEGLVARKEASGTNIYHALKCREPE---GKDLLSYMHILYEICPYLKFGY 267
                     5799*****************************************************************9...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     ++aN aI +a ++e+r+HiiDf+i +G+QW++LlqaLa+Rp+g+p++RiTg+++p ++  + + le++g+rLa + +++++p+ef+  v +   d
  XP_023913389.1 268 MAANGAIADACKNEDRIHIIDFQIAMGTQWMTLLQALAARPGGAPHVRITGIDDPVYKyaRGDGLEAVGRRLAAISAKFNIPVEFHG-VPEFAPD 361
                     *******************************************************999999**************************.799999* PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++ ++L+v+pgEalaVn+ lqlh+++desv+++++rde+L+++kslsPkvv++veqe+++n+++F++rf+e+leyy a+f+s++++lpr+s+eri
  XP_023913389.1 362 ITRDMLNVRPGEALAVNFPLQLHHTPDESVDVNNPRDELLRMIKSLSPKVVTLVEQESNTNTTPFFHRFVETLEYYLAMFESIDVTLPRNSKERI 456
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +vE+++l+r+ivn++aceg+er+erhe ++kW++rl++aGF+++pls+++++ +k+llr ++ + y++ e++g+++lgWk+r+L+s+SaW+
  XP_023913389.1 457 NVEQHCLARDIVNIIACEGKERVERHELFGKWKSRLTMAGFRQYPLSTYVNSVIKSLLRCYS-EHYNLVEKDGAMLLGWKNRNLISASAWQ 546
                     **********************************************************9999.66*************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    
MDSRQLFGIG VTSAGISFTS SHPTVSSIPT RLLGSLKFDF GNSPNSPFSS HFDSDTLTAL  60
SDGQEQHSST ENLSGVSPSC NSSLESISYF YRPRPSLDCH QDSQELHSGG ACFIQDANCS  120
PNIKHVLLDI ETALMGPDDG EEVTTREISI PETPVQRSRS WSQEPQGVNG FAQGNLKELL  180
TACAKALSDN RMDDFDKLTE KARDAVSITG EPIQRLGAYM VEGLVARKEA SGTNIYHALK  240
CREPEGKDLL SYMHILYEIC PYLKFGYMAA NGAIADACKN EDRIHIIDFQ IAMGTQWMTL  300
LQALAARPGG APHVRITGID DPVYKYARGD GLEAVGRRLA AISAKFNIPV EFHGVPEFAP  360
DITRDMLNVR PGEALAVNFP LQLHHTPDES VDVNNPRDEL LRMIKSLSPK VVTLVEQESN  420
TNTTPFFHRF VETLEYYLAM FESIDVTLPR NSKERINVEQ HCLARDIVNI IACEGKERVE  480
RHELFGKWKS RLTMAGFRQY PLSTYVNSVI KSLLRCYSEH YNLVEKDGAM LLGWKNRNLI  540
SASAWQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein