PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023913271.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

ARF

Protein Properties

Length: 701aa MW: 78261.1 Da PI: 6.6648

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023913271.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.2	6.5e-23	130	230	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+kvlt sd++++g +++ +k+a+e+ + ++ +++l+ +d++g W +k+i+r++++r++lt+GW+ Fv +++L +gD++vF + + XP_023913271.1 130 FCKVLTASDTSTHGGFSVLRKHATEClppldmtQ--STPTQELVARDLHGYAWHFKHIFRGQPRRHLLTTGWSVFVTSKRLVAGDTFVFL--RGE 220 99**************************9644..444569********************************************..448 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 +++l+v+v+r XP_023913271.1 221 NGQLRVGVRR 230 9999**98 PP
2	Auxin_resp	100.4	2.4e-33	256	335	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ s+F+++++k+++a+++kv vGmRfkm+fe+eds+er++sGt++g++d++p +W++S WrsLk XP_023913271.1 256 ASHAVATQTLFVVYYKPRT--SQFIISLNKYLEAVNNKVGVGMRFKMNFEGEDSPERKFSGTIIGTEDISP-HWEKSTWRSLK 335 789*************6..9*******************************************99.*******96 PP

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence
MMANRGGSFS QTNIAAGEGC LRDELYVELW KACAGPLVDV PKSGERVFYF PQGHMEQLEA 60 STNQELNQRI PLFKLPSKIL CRVIHVELLA EQDTDEVYAQ ITLQPESEEI EPTSPDHCPP 120 EPPKPTVHSF CKVLTASDTS THGGFSVLRK HATECLPPLD MTQSTPTQEL VARDLHGYAW 180 HFKHIFRGQP RRHLLTTGWS VFVTSKRLVA GDTFVFLRGE NGQLRVGVRR LAHQQSSMPS 240 SVISSQSMHL GVLATASHAV ATQTLFVVYY KPRTSQFIIS LNKYLEAVNN KVGVGMRFKM 300 NFEGEDSPER KFSGTIIGTE DISPHWEKST WRSLKVHWDE PASIPRPDRV SPWEIEPFVA 360 SIPASLTQPA MAKNKRPRTP IELPTHDNTT STPSTLWNSG LTQAHEMTQL MAEGKRSENH 420 VWHHKQIDIN SNSNSISRTQ TDGSRFSSPH TCATQHLFQE MVDDSKSVSA WPAHIGCSTP 480 HSLKLNNDPX PDPVEKAKKT ETATSYRIFG FELISHSTGS LPVENATVQP VSVSSGSTEG 540 HVSTLSAIDS DQKSDLSKGS KDRQLGQLQV PSKEIQSKQN FFASTRSRTK VQMQGVAVGR 600 AVDLTMLEGY EQLIDELEEM FDIKGQLRPR NKWEIVYTDD EGDMMLVGDD PWQEFCNMVR 660 RILICSSQDV KKLSPGRKLP MSSIEVVGEL ESLGLENLVH T

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence

MMANRGGSFS QTNIAAGEGC LRDELYVELW KACAGPLVDV PKSGERVFYF PQGHMEQLEA  60
STNQELNQRI PLFKLPSKIL CRVIHVELLA EQDTDEVYAQ ITLQPESEEI EPTSPDHCPP  120
EPPKPTVHSF CKVLTASDTS THGGFSVLRK HATECLPPLD MTQSTPTQEL VARDLHGYAW  180
HFKHIFRGQP RRHLLTTGWS VFVTSKRLVA GDTFVFLRGE NGQLRVGVRR LAHQQSSMPS  240
SVISSQSMHL GVLATASHAV ATQTLFVVYY KPRTSQFIIS LNKYLEAVNN KVGVGMRFKM  300
NFEGEDSPER KFSGTIIGTE DISPHWEKST WRSLKVHWDE PASIPRPDRV SPWEIEPFVA  360
SIPASLTQPA MAKNKRPRTP IELPTHDNTT STPSTLWNSG LTQAHEMTQL MAEGKRSENH  420
VWHHKQIDIN SNSNSISRTQ TDGSRFSSPH TCATQHLFQE MVDDSKSVSA WPAHIGCSTP  480
HSLKLNNDPX PDPVEKAKKT ETATSYRIFG FELISHSTGS LPVENATVQP VSVSSGSTEG  540
HVSTLSAIDS DQKSDLSKGS KDRQLGQLQV PSKEIQSKQN FFASTRSRTK VQMQGVAVGR  600
AVDLTMLEGY EQLIDELEEM FDIKGQLRPR NKWEIVYTDD EGDMMLVGDD PWQEFCNMVR  660
RILICSSQDV KKLSPGRKLP MSSIEVVGEL ESLGLENLVH T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23980.1	0.0	ARF family protein