PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023912631.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 764aa MW: 83427.2 Da PI: 6.0944

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023912631.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.5	5.4e-06	407	430	2	23
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 C+ C+k F+r+ +L++Hi+tH XP_023912631.1 407 ACSisGCDKEFKRPCDLTKHIKTH 430 688999*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 764 aa Download sequence
MTPSLIDSFQ NMSIRKGDTF HNPSTADPLW DPLESSVTNP AQTARATTCP KSLEDLLIGA 60 GERRAAELLA RVDKAIETNS KLALSSVLTD PDVLPTPSLG SIPETSADED STVRKAGLRT 120 RRHSHSSDSG LGASVAGTTE SAEDKVVEDI GQYTHGCAGH DARANLGQDS DSSSTIGGRS 180 FSQISAASDE ERGLSDYAIK QIKIHIVDPI LREPRLQEFH PLISGVPERI GNKKIKNLRE 240 LEKTLIFLAP EYSRSPSTYL RFCERTIRVL HTTVTTLHES DQKASADRPY TQGYFFELVE 300 QIRRYATILA VTREKQAKGE KLDEMDYSPD ESVSVLGGMT HNGKPAELVR HKDGKVISIA 360 TGLAISPDDL ASSSMKRPMS DAEYDEDDDV LRSMARRKKN AKPEIHACSI SGCDKEFKRP 420 CDLTKHIKTH ERPWKCPEEQ CKYHDHGWPT EKERDRHVND KHSTAPSLYH CLFPPCPYTS 480 KRESNCKQHM EKAHGWDYIR SKNNGKGKAV ATTRLPQGSI PPSPSSTLLT PLTPIAPSPS 540 IQSWSDASHR SSMPPPGVAG PSTYSTPSFT HPSPDFAGHF NMDFDFSNMD HGFNAGFPIT 600 PAMSEDRRAS SAGCSSHSGF QADGSAFDDG LSPHQLNLDS YNFNDYSNFQ QPTPDSSAVP 660 GSGHLSVSHA SHASPGAQLN QTFNGNFYDD MNIDGAFGDG YDGPNEDFQL FGGNPSGAAP 720 TTPGEMFPAT GSDSQGWNNF GGQFPQMKSA NSTLDDLFPE LKNH

Sequence ? help Back to Top

Protein Sequence Length: 764 aa Download sequence

MTPSLIDSFQ NMSIRKGDTF HNPSTADPLW DPLESSVTNP AQTARATTCP KSLEDLLIGA  60
GERRAAELLA RVDKAIETNS KLALSSVLTD PDVLPTPSLG SIPETSADED STVRKAGLRT  120
RRHSHSSDSG LGASVAGTTE SAEDKVVEDI GQYTHGCAGH DARANLGQDS DSSSTIGGRS  180
FSQISAASDE ERGLSDYAIK QIKIHIVDPI LREPRLQEFH PLISGVPERI GNKKIKNLRE  240
LEKTLIFLAP EYSRSPSTYL RFCERTIRVL HTTVTTLHES DQKASADRPY TQGYFFELVE  300
QIRRYATILA VTREKQAKGE KLDEMDYSPD ESVSVLGGMT HNGKPAELVR HKDGKVISIA  360
TGLAISPDDL ASSSMKRPMS DAEYDEDDDV LRSMARRKKN AKPEIHACSI SGCDKEFKRP  420
CDLTKHIKTH ERPWKCPEEQ CKYHDHGWPT EKERDRHVND KHSTAPSLYH CLFPPCPYTS  480
KRESNCKQHM EKAHGWDYIR SKNNGKGKAV ATTRLPQGSI PPSPSSTLLT PLTPIAPSPS  540
IQSWSDASHR SSMPPPGVAG PSTYSTPSFT HPSPDFAGHF NMDFDFSNMD HGFNAGFPIT  600
PAMSEDRRAS SAGCSSHSGF QADGSAFDDG LSPHQLNLDS YNFNDYSNFQ QPTPDSSAVP  660
GSGHLSVSHA SHASPGAQLN QTFNGNFYDD MNIDGAFGDG YDGPNEDFQL FGGNPSGAAP  720
TTPGEMFPAT GSDSQGWNNF GGQFPQMKSA NSTLDDLFPE LKNH