PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023912292.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 359aa MW: 40568.5 Da PI: 6.4234

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023912292.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.5	1.2e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ ++ q+G+g +W + ++++g++R++k+c++rw++yl XP_023912292.1 14 KGPWSPEEDAKLKAYIDQHGTGgNWIALPQKVGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	37.5	5.6e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ XP_023912292.1 69 GGFSEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDAKLKAYID QHGTGGNWIA LPQKVGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR 120 RKQSNMNNMS SMGGETKDAN GQEDDSYSPG LSSSAFERLQ LHMQLQSLQN PLSFYNNPAL 180 WPKLHPLHEK MIQNLQSLNE FPNTPLMDHA FPSPQPVQGQ KVGFYESPTA AKVNELEKSL 240 HGISSSDNSV AFINENNPMD STHVPKANDI EQSNAGIQAS VFQAEIDNFL NTKTVDFVPR 300 EDQMAEFDCF KEMNVSKDGV LWWSMNDFDT RSASLNSWDS TSVLHSQQIF QEYELGYNL

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MGRAPCCDKA NVKKGPWSPE EDAKLKAYID QHGTGGNWIA LPQKVGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR  120
RKQSNMNNMS SMGGETKDAN GQEDDSYSPG LSSSAFERLQ LHMQLQSLQN PLSFYNNPAL  180
WPKLHPLHEK MIQNLQSLNE FPNTPLMDHA FPSPQPVQGQ KVGFYESPTA AKVNELEKSL  240
HGISSSDNSV AFINENNPMD STHVPKANDI EQSNAGIQAS VFQAEIDNFL NTKTVDFVPR  300
EDQMAEFDCF KEMNVSKDGV LWWSMNDFDT RSASLNSWDS TSVLHSQQIF QEYELGYNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	3e-98	MYB family protein