PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023912071.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 419aa MW: 46548.2 Da PI: 8.3929

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023912071.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.7	4.8e-06	57	79	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_023912071.1 57 YVCEICNQGFQRDQNLQMHRRRH 79 9*********************9 PP
2	zf-C2H2	16.2	3.1e-05	134	156	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ XP_023912071.1 134 WVCEKCSKGYAVQSDYKAHLKTC 156 58*******************98 PP
3	zf-C2H2	11	0.0013	164	182	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr +++ H+ t+ XP_023912071.1 164 DCGRVFSRVESFIEHQDTC 182 9***************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence
MFDNSASSGA PSSSSDAFAS LENGVTNKRK RRPAGTPDPD AEVVSLSPKT LLESDRYVCE 60 ICNQGFQRDQ NLQMHRRRHK VPWKLLKRET QEVKKRVFVC PEPSCLHHDP CHALGDLVGI 120 KKHFRRKHSN HKQWVCEKCS KGYAVQSDYK AHLKTCGTRG HSCDCGRVFS RVESFIEHQD 180 TCNVRHSRPE IQALQPACSS RTASSTSPSS DNTNNFSIAP LPGLSTPKPT EPVFLTSEQN 240 NAPSTSKARQ HNLELQLLPS SNALSLKLSI GSSCDGGERN ESNKPNLDTS KRPINENGVV 300 NEQTLEVTRL KDFASEELKL AMAERAYAEE ARREAKRQIE IAELDFANAK RIRQQAQSEL 360 EKAQVLKEQA IKKISSTMLQ ITCQACKQQF HASTVVSPSD EISLAVSYMS SATTEGEGE

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence

MFDNSASSGA PSSSSDAFAS LENGVTNKRK RRPAGTPDPD AEVVSLSPKT LLESDRYVCE  60
ICNQGFQRDQ NLQMHRRRHK VPWKLLKRET QEVKKRVFVC PEPSCLHHDP CHALGDLVGI  120
KKHFRRKHSN HKQWVCEKCS KGYAVQSDYK AHLKTCGTRG HSCDCGRVFS RVESFIEHQD  180
TCNVRHSRPE IQALQPACSS RTASSTSPSS DNTNNFSIAP LPGLSTPKPT EPVFLTSEQN  240
NAPSTSKARQ HNLELQLLPS SNALSLKLSI GSSCDGGERN ESNKPNLDTS KRPINENGVV  300
NEQTLEVTRL KDFASEELKL AMAERAYAEE ARREAKRQIE IAELDFANAK RIRQQAQSEL  360
EKAQVLKEQA IKKISSTMLQ ITCQACKQQF HASTVVSPSD EISLAVSYMS SATTEGEGE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	28	33	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-143	C2H2 family protein