PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023911982.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family NF-YA
Protein Properties Length: 336aa    MW: 36039.7 Da    PI: 9.7149
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023911982.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.71.6e-32211268158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     ++plYVNaKQ++rIlkRR++R+klee  +l++k+rkpylheSRh+hA+rRpRg+gGrF
  XP_023911982.1 211 ESPLYVNAKQFHRILKRRMARQKLEEALRLTSKGRKPYLHESRHNHAMRRPRGPGGRF 268
                     58*******************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MESYTQYHHQ PPSAYPHAHV QQQQNHTSPT MQTQQQPNYN QGQQPGQMSG HLMMPGGYGA  60
SGYGMQAPYG VSPSQAAAMA TAAASGYPAY SVGDGTTLQS SMPQGKIDGS GMQRPSEQSP  120
RQNQISAPGG LPGQMASAHP MSNNMGQPIS GQQMSVQRRV SHSVNNGQTA QTSMGMPRPS  180
MPPQAQPPPQ QAPAQPPQQS LEGPVAGSAE ESPLYVNAKQ FHRILKRRMA RQKLEEALRL  240
TSKGRKPYLH ESRHNHAMRR PRGPGGRFLT ADEVAAMEAA GRAPDANGNF KDIDSLNLPA  300
TNGNSKRKAG AQGRNGTPSK RAKSTEDDED DEDDDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223228RILKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.11e-21NF-YA family protein