PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023911785.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 321aa MW: 36000.5 Da PI: 8.28

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023911785.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.9	8.7e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl XP_023911785.1 14 KGPWSPEEDSKLKEYIEKYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	38.8	2.2e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ eEd ++ +++ G++ W+ Ia+ ++ gRt++++k++w++ XP_023911785.1 69 GEFSDEEDRIICTLFASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 789****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDSKLKEYIE KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPNIKHGE FSDEEDRIIC TLFASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGM 120 LPPSQRKPPP FPSPHQGPPF QSQPLSYKEC SLSYYSPTTT KSFSGLESMS VPLNFSNTTT 180 SLATNNPSSL FQTQESWLGS MQYYPVKENL LMFGSEGSTC SSSDGSCTQI SYGRVVKQEE 240 MGFQSYISNG LEENQKFMLN YGSNSIGGQN VTNGYFGEIP LDYGIEDVKQ LISSSSTNCS 300 NSLLNNIDEN KTQEKVTYFY Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	1e-74	MYB family protein