PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023911673.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 526aa MW: 57992.3 Da PI: 8.4613

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023911673.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.2	2.8e-08	443	465	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++lCr+fa++G C+ G+ C+F H XP_023911673.1 443 RPLCRYFAASGKCRDGNECRFRH 465 89*******************77 PP

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence
MSKNFTFPPP PPPPPKATTT WKKDTAGFNT TKQDLHYARG DRSERGDHVG STGYGTSSAK 60 VYNDTHLHGP GLQDEGPAMR NYRPNHSLPI ASSLPPGAYV NPSIHAHVIG QRNANVHPPQ 120 AQPGQTTYTP AGRKRKLEVL RGSQQERMRI ESPIAPEVPR FGEGQPSSSR HGRSHFITHR 180 NASPPNAFGL VPTETHPHDD SSEASEDDKE VDEETLFAEL GDKLTFEHNG TVMTLSTAAD 240 IAAWQLERKK NWPTKARVEE KDAVKRVVGA ERRRLLSAAD VLNEPMAGMS VRRTKREATA 300 IAAKSQQNLA TPAVVGTESE LQSMRRKLVE QTEKLESLRR KVAGSQVRLD DQKARQVVED 360 DRLAESLAQR MPRTNTPARE ELSGEMSDML SDSSVVSSDS DDDSIGSSAH QGKLAESYVE 420 EHDDGAPEEA SSKRPEKASA ESRPLCRYFA ASGKCRDGNE CRFRHESQPY SHQDVVRTRP 480 APKPLPSTST TSRKGISQRL AEQEQKENDR LVLQVVKSLG SAGFFK

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence

MSKNFTFPPP PPPPPKATTT WKKDTAGFNT TKQDLHYARG DRSERGDHVG STGYGTSSAK  60
VYNDTHLHGP GLQDEGPAMR NYRPNHSLPI ASSLPPGAYV NPSIHAHVIG QRNANVHPPQ  120
AQPGQTTYTP AGRKRKLEVL RGSQQERMRI ESPIAPEVPR FGEGQPSSSR HGRSHFITHR  180
NASPPNAFGL VPTETHPHDD SSEASEDDKE VDEETLFAEL GDKLTFEHNG TVMTLSTAAD  240
IAAWQLERKK NWPTKARVEE KDAVKRVVGA ERRRLLSAAD VLNEPMAGMS VRRTKREATA  300
IAAKSQQNLA TPAVVGTESE LQSMRRKLVE QTEKLESLRR KVAGSQVRLD DQKARQVVED  360
DRLAESLAQR MPRTNTPARE ELSGEMSDML SDSSVVSSDS DDDSIGSSAH QGKLAESYVE  420
EHDDGAPEEA SSKRPEKASA ESRPLCRYFA ASGKCRDGNE CRFRHESQPY SHQDVVRTRP  480
APKPLPSTST TSRKGISQRL AEQEQKENDR LVLQVVKSLG SAGFFK