PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023911258.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 211aa MW: 24338.5 Da PI: 9.2317 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.6 | 4.5e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvt+skRrngi+KKA+EL vLCda+v++i+fsstgk++ey s XP_023911258.1 9 KRIENQTNRQVTYSKRRNGIFKKAQELTVLCDAKVSIIMFSSTGKFHEYTS 59 79***********************************************75 PP | |||||||
2 | K-box | 59.5 | 1.4e-20 | 71 | 145 | 1 | 75 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellle 75 yqk+ +++l+++++e +q++l+kLk+ ++ L re+R+++GedL+ Lsl +L++L++++ +sl +R++K + l e XP_023911258.1 71 YQKALDTDLWSSHYEIMQENLRKLKEINNRLSREIRQRVGEDLNGLSLDDLRSLQNKVSSSLDIVRARKVKNLEE 145 78889999*************************************************************998876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence |
MGRGKIEIKR IENQTNRQVT YSKRRNGIFK KAQELTVLCD AKVSIIMFSS TGKFHEYTSP 60 SITTKKIYDQ YQKALDTDLW SSHYEIMQEN LRKLKEINNR LSREIRQRVG EDLNGLSLDD 120 LRSLQNKVSS SLDIVRARKV KNLEERHGNL LLDLRARLED PQYGLVDNEG DYESTIALTN 180 GASNLYAFRL HSSHLDLHHA GGFETEDLRL A |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 2e-73 | MIKC_MADS family protein |