PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023910219.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family NF-YA
Protein Properties Length: 336aa    MW: 35994.6 Da    PI: 9.7151
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023910219.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.71.6e-32211268158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     ++plYVNaKQ++rIlkRR++R+klee  +l++k+rkpylheSRh+hA+rRpRg+gGrF
  XP_023910219.1 211 ESPLYVNAKQFHRILKRRMARQKLEEALRLTSKGRKPYLHESRHNHAMRRPRGPGGRF 268
                     58*******************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MESYAQYHHQ PPSAYSHAHV QQQQNHASPT MQTQQQPSYS QGQQPGQMPG HLMMPGGYGA  60
SGYGMQAPYG VSPSQAAAMA TAAASGYPAY PVGDATSLQS SMPQGKIDGS GLQRPNEQSP  120
RQNQMSAPGG LPGQMAPTHS MSGNMGQQLP GQQMSVQRRV SHSVNNGQSA QASMGMSRPS  180
MPPQNQQAQP QASTHPPQQS LDGPVAGSAE ESPLYVNAKQ FHRILKRRMA RQKLEEALRL  240
TSKGRKPYLH ESRHNHAMRR PRGPGGRFLT ADEVAAMEAA GRAPDANGNF KDIDSLNLPT  300
TNGNSKRKAG AHGRNGTPSK RAKSAEDDED DEDDDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223228RILKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.12e-21NF-YA family protein