PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023910159.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 696aa MW: 75742.9 Da PI: 5.7136

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023910159.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.7	4.8e-06	339	362	2	23
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 C+ C+k F+r+ +L++Hi+tH XP_023910159.1 339 ACSisGCDKEFKRPCDLTKHIKTH 362 688999*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 696 aa Download sequence
MTPSLIDSFQ NMSIRKGDTF HNQSTADPLW DPLESNLASP AQTPRASTCP KSLEDLLIGA 60 GERRAAELFA RVDKAIATNS KLALSSVLTD PDVLPVPSIA VTPEASADED PATRKAGLRT 120 RSHSHSSDSG LGASVASTTE SARDLDLEDV DSDSSSTIGG RSLSQISAAS DEERGLSDYA 180 VKQIKKHIVD PILREPRLQE FHPLISGVPE RIGDKKIKNL RELEKTLIFL APIRRYATIL 240 AVTREKQAKG EKLDEMDYSP EESVSVLGGM THNGKPAELV RHKDGKVISI ATGLAIPPED 300 LASSSMKRPM SGAEYDEDDD DVLRSMARRK KNAKPEIHAC SISGCDKEFK RPCDLTKHIK 360 THERPWKCPE EQCKYHDHGW PTEKERDRHV NDKHSTAPSL YHCLFPPCPY TSKRESNCKQ 420 HMEKAHGWDY IRSKSNGKGK AIATARLPLG SIPPSPSSTL LTPLTPIAPS PSIQSWSDAS 480 HRGSMPPPGV AGPSTYSTPS FTHPSPDFAG HFNMDFDFNN MDHGFNAGFP MTPAMSEDRR 540 ESSAGCSSHS GFPLDGSAFD DGLSPHQLNL DSYNFDDYSN FQQPTPESSA VPGSGHLSVS 600 HASHTSPGAQ LDQTFNGNFY DDMNIDGAFG DEYNGPSEDF QLFGGNPSGP APTTPNDMFP 660 TVGSESNGWN NIGGQFPQIK SANSTLEDLF PELKNH

Sequence ? help Back to Top

Protein Sequence Length: 696 aa Download sequence

MTPSLIDSFQ NMSIRKGDTF HNQSTADPLW DPLESNLASP AQTPRASTCP KSLEDLLIGA  60
GERRAAELFA RVDKAIATNS KLALSSVLTD PDVLPVPSIA VTPEASADED PATRKAGLRT  120
RSHSHSSDSG LGASVASTTE SARDLDLEDV DSDSSSTIGG RSLSQISAAS DEERGLSDYA  180
VKQIKKHIVD PILREPRLQE FHPLISGVPE RIGDKKIKNL RELEKTLIFL APIRRYATIL  240
AVTREKQAKG EKLDEMDYSP EESVSVLGGM THNGKPAELV RHKDGKVISI ATGLAIPPED  300
LASSSMKRPM SGAEYDEDDD DVLRSMARRK KNAKPEIHAC SISGCDKEFK RPCDLTKHIK  360
THERPWKCPE EQCKYHDHGW PTEKERDRHV NDKHSTAPSL YHCLFPPCPY TSKRESNCKQ  420
HMEKAHGWDY IRSKSNGKGK AIATARLPLG SIPPSPSSTL LTPLTPIAPS PSIQSWSDAS  480
HRGSMPPPGV AGPSTYSTPS FTHPSPDFAG HFNMDFDFNN MDHGFNAGFP MTPAMSEDRR  540
ESSAGCSSHS GFPLDGSAFD DGLSPHQLNL DSYNFDDYSN FQQPTPESSA VPGSGHLSVS  600
HASHTSPGAQ LDQTFNGNFY DDMNIDGAFG DEYNGPSEDF QLFGGNPSGP APTTPNDMFP  660
TVGSESNGWN NIGGQFPQIK SANSTLEDLF PELKNH