PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023909840.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 1289aa MW: 141436 Da PI: 7.1178

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023909840.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.3	3e-06	179	201	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C++sF r ++LkrH r+H XP_023909840.1 179 HVCATCTRSFARLEHLKRHERSH 201 79*******************99 PP
2	zf-C2H2	21.5	6e-07	207	230	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++Cp C+++F r+++L rH+++ H XP_023909840.1 207 FECPECTRCFARRDLLLRHQQKlH 230 89*******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 1289 aa Download sequence
MVYLSTSDEW QRQSALLLQA RPSTTRITTK YKIPNLSSPK YQTSRKRKRE GNGGAEEKED 60 VNAPKIPRAV LVLKTYDHES GACLKFKTDR AAEVGRLIGS LGRLGRHMAA LPQQAEGETA 120 VATFRYVPTL SQARGRRRSS SDKCTAPRAP ANGTSAASQN GTTLNNQFPP PKTDKPRPHV 180 CATCTRSFAR LEHLKRHERS HTKEKPFECP ECTRCFARRD LLLRHQQKLH MTNTTSSRPR 240 ANRRESTSST ISTANKVRKN SVANINTIGL GTGMQRPRAN TISHLDFGSL GLGDGMSGNL 300 GWLNALGINQ THGLGTNGPP VNFNYQGMST NMSHHASSHG LPRLDMHNIN AMDTSNTLRT 360 APPMASFEAS TGFSLDQLFG PGNTINPAQL HSGPPMTSGN GNDHFQAFSD LHPTIPEGDD 420 FEWMRNWNMQ MHGQESNEQA IDESSPSRMS SGDSPDDFND SLANSANIAV PTQNNMGWGY 480 QDLSLHQTIS NVSNFSNFSN NSFHLDPLGM HPPNLDGQTM SPSQLHDHSA QGDAYFHQGA 540 MQQNTANQLH QQPDMSHNNV ANLFAPSLSN FSSDSPNMSN SSMNGSAPQS SVTSASTDSI 600 TEATRQALLF NLSQPSVFGS SHRKFSQPSV SSPLSPGAGF ARNGFQGPSL PSVDDIRRYV 660 DAFIQYSHPH MPVCHVPTLS FDPNDDLNYV KTQGDRSYSD ALAGGGCLIL SMAAIGALHE 720 YDHPTSKELF EAAKKMISIY LEERRKADMS AAVNGNSDLA RQTPLWLVQA MLLNVIYGHQ 780 CGDKTAADIA SNHCAALVSL AKAAELAKPS HPKFQGHGPD SGMTDNESPE VDLHTQWVQW 840 KVEETRKRTL YAIFILSSLL TTAYNQTPTI MNSEILLDLP CDEALWAAET AHEWQKRGGL 900 AAIEATSISF ASALSTLLTA NQRQGNKRTG HVSSNPLEVL QSSESPPGDF RPSTFGCLVL 960 ISALHNYIWE TRSRHHSRHW TLQETESMFS HIEPALNAWQ AAWKANEHHR LERPNPFGLG 1020 PLSADSIPLL DQAFVRLYVN LGRSKEAFWA RDFDAMSNEL ARGNEIVQHA EPDGIDGQNE 1080 SGTLNGHGEN GQRRTSQAQA SGQASSKRER HLRRAAFYAA DSLTIACSYN LTYADGSAHE 1140 LPIQSAMCFF DCAQVLAEWA GTVQERVGRY LGILGRDQID FTQVPAIMLL ENEDVDLLRK 1200 IEHITNSLEA KRFQQDNMLG GDLSQMNGYA ATAMHNNVHL GSCGYGSKIL RVAGMMLEKA 1260 VVWPVTHVMA KALETQAGHM DRRSEASCT

Sequence ? help Back to Top

Protein Sequence Length: 1289 aa Download sequence

MVYLSTSDEW QRQSALLLQA RPSTTRITTK YKIPNLSSPK YQTSRKRKRE GNGGAEEKED  60
VNAPKIPRAV LVLKTYDHES GACLKFKTDR AAEVGRLIGS LGRLGRHMAA LPQQAEGETA  120
VATFRYVPTL SQARGRRRSS SDKCTAPRAP ANGTSAASQN GTTLNNQFPP PKTDKPRPHV  180
CATCTRSFAR LEHLKRHERS HTKEKPFECP ECTRCFARRD LLLRHQQKLH MTNTTSSRPR  240
ANRRESTSST ISTANKVRKN SVANINTIGL GTGMQRPRAN TISHLDFGSL GLGDGMSGNL  300
GWLNALGINQ THGLGTNGPP VNFNYQGMST NMSHHASSHG LPRLDMHNIN AMDTSNTLRT  360
APPMASFEAS TGFSLDQLFG PGNTINPAQL HSGPPMTSGN GNDHFQAFSD LHPTIPEGDD  420
FEWMRNWNMQ MHGQESNEQA IDESSPSRMS SGDSPDDFND SLANSANIAV PTQNNMGWGY  480
QDLSLHQTIS NVSNFSNFSN NSFHLDPLGM HPPNLDGQTM SPSQLHDHSA QGDAYFHQGA  540
MQQNTANQLH QQPDMSHNNV ANLFAPSLSN FSSDSPNMSN SSMNGSAPQS SVTSASTDSI  600
TEATRQALLF NLSQPSVFGS SHRKFSQPSV SSPLSPGAGF ARNGFQGPSL PSVDDIRRYV  660
DAFIQYSHPH MPVCHVPTLS FDPNDDLNYV KTQGDRSYSD ALAGGGCLIL SMAAIGALHE  720
YDHPTSKELF EAAKKMISIY LEERRKADMS AAVNGNSDLA RQTPLWLVQA MLLNVIYGHQ  780
CGDKTAADIA SNHCAALVSL AKAAELAKPS HPKFQGHGPD SGMTDNESPE VDLHTQWVQW  840
KVEETRKRTL YAIFILSSLL TTAYNQTPTI MNSEILLDLP CDEALWAAET AHEWQKRGGL  900
AAIEATSISF ASALSTLLTA NQRQGNKRTG HVSSNPLEVL QSSESPPGDF RPSTFGCLVL  960
ISALHNYIWE TRSRHHSRHW TLQETESMFS HIEPALNAWQ AAWKANEHHR LERPNPFGLG  1020
PLSADSIPLL DQAFVRLYVN LGRSKEAFWA RDFDAMSNEL ARGNEIVQHA EPDGIDGQNE  1080
SGTLNGHGEN GQRRTSQAQA SGQASSKRER HLRRAAFYAA DSLTIACSYN LTYADGSAHE  1140
LPIQSAMCFF DCAQVLAEWA GTVQERVGRY LGILGRDQID FTQVPAIMLL ENEDVDLLRK  1200
IEHITNSLEA KRFQQDNMLG GDLSQMNGYA ATAMHNNVHL GSCGYGSKIL RVAGMMLEKA  1260
VVWPVTHVMA KALETQAGHM DRRSEASCT