PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023909245.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 579aa    MW: 64588.1 Da    PI: 6.0879
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023909245.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4319e-1322095791374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+elL++cA+a+s++ + + ++l ++ ++ +s +g+p+qRl ay++e+L ar   s++++y+al+++e +    ++ l+++++++e++P+lkf++
  XP_023909245.1 209 LKELLTACAKALSDNRMDEFDKLTEKARDAVSITGEPIQRLGAYMVEGLVARKEASGTNIYHALKCREPE---GKDLLSYMHILYEICPYLKFGY 300
                     5799*****************************************************************9...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     ++aN aI +a ++e+r+HiiDf+i +G+QW++LlqaLa+Rp+g+p++RiTg+++p ++  + + le++g+rLa + +++++p+ef+  v +   d
  XP_023909245.1 301 MAANGAIADACKNEDRIHIIDFQIAMGTQWMTLLQALAARPGGAPHVRITGIDDPVYKyaRGDGLEAVGRRLAAISAKFNIPVEFHG-VPEFAPD 394
                     *******************************************************999999**************************.799999* PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++ ++L+v+pgEalaVn+ lqlh+++desv+++++rde+L+++kslsPkvv++veqe+++n+++F++rf+e+leyy a+f+s++++lpr+s+eri
  XP_023909245.1 395 ITRDMLNVRPGEALAVNFPLQLHHTPDESVDVNNPRDELLRMIKSLSPKVVTLVEQESNTNTTPFFHRFVETLEYYLAMFESIDVTLPRNSKERI 489
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +vE+++l+r+ivn++aceg+er+erhe ++kW++rl++aGF+++pls+++++ +k+llr ++ + y++ e++g+++lgWk+r+L+s+SaW+
  XP_023909245.1 490 NVEQHCLARDIVNIIACEGKERVERHELFGKWKSRLTMAGFRQYPLSTYVNSVIKSLLRCYS-EHYNLVEKDGAMLLGWKNRNLISASAWQ 579
                     **********************************************************9999.66*************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    
MDSRQLFGIG VTSAGISFTS SHPTVSSIPT RLLGSLKFDF GNSPNSPVSS HFDSDTLTAL  60
SDGQEQHSST ENLSGVSPSC NSSLESSSYF YRPRPSLDCH QDSQELHSGG ACFIQDANCS  120
PNIKHVLLDI ETALMGPDDG EEVTTREISI PETPVQRSRS WSQEPQGVNV FHSQPSFVPM  180
QQSVEVVHVE KRHKVKDELP LQGFAQGNLK ELLTACAKAL SDNRMDEFDK LTEKARDAVS  240
ITGEPIQRLG AYMVEGLVAR KEASGTNIYH ALKCREPEGK DLLSYMHILY EICPYLKFGY  300
MAANGAIADA CKNEDRIHII DFQIAMGTQW MTLLQALAAR PGGAPHVRIT GIDDPVYKYA  360
RGDGLEAVGR RLAAISAKFN IPVEFHGVPE FAPDITRDML NVRPGEALAV NFPLQLHHTP  420
DESVDVNNPR DELLRMIKSL SPKVVTLVEQ ESNTNTTPFF HRFVETLEYY LAMFESIDVT  480
LPRNSKERIN VEQHCLARDI VNIIACEGKE RVERHELFGK WKSRLTMAGF RQYPLSTYVN  540
SVIKSLLRCY SEHYNLVEKD GAMLLGWKNR NLISASAWQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.11e-180GRAS family protein