PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023909127.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 587aa MW: 65122.1 Da PI: 7.1286

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023909127.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.6	6.6e-06	262	280	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C ++r+G+Ck G++CkF H XP_023909127.1 262 CV-YFRMGQCKSGEQCKFQH 280 55.6777************* PP

Sequence ? help Back to Top
Protein Sequence Length: 587 aa Download sequence
MSSTNDEKRG GGGGTGEASD TREVSTIESS LRKELDFVKL KLEESSFVLV LIDAEGYIFD 60 GRLVKRGFEG GEQAAEFLQQ VVQRWMVEDG LSDCDMKILA YGNILGLSTS LHRVGLCGPE 120 ERSFASFATG FTQCDGLVDF IDSGERQFET WHKVNAALRH HAMQPSCRRI YFAGCHEAKY 180 IDYLRSCTIL GGRITLVDAP EVEPEFIRLG LPAKDLPVLF RSMQLEYART PPPEPSESSD 240 TIVRPEDHTS RKEGKEGDSL PCVYFRMGQC KSGEQCKFQH ANVPKAMKSD KILPVELAET 300 PAIISTPQKP QDSDEVDLVL PPIANKKKVN DQKIIIPRLV IPVCGKTALN KEYFAPLLVP 360 ERFTKPGYVG INSNGHRIDP YMPPPSKQAT ADFIRLHSKN HLCNSHNLIG HCEKGSRCKY 420 DHRPISRGVF NMLKRTARSN PCRRKGLCRI LHCNSGHICQ LPDCHRRGGT VKCKMGPEYH 480 LEDNELKTTG YVKGDAKDRE GRAETRSRAS SMACSRASPT PSVSPASNIV KPRQKAQVIT 540 PPGSDDEMPL IDLEDDVDTI TQHPEVLLGP HAHAADTEVL PPDESLL

Sequence ? help Back to Top

Protein Sequence Length: 587 aa Download sequence

MSSTNDEKRG GGGGTGEASD TREVSTIESS LRKELDFVKL KLEESSFVLV LIDAEGYIFD  60
GRLVKRGFEG GEQAAEFLQQ VVQRWMVEDG LSDCDMKILA YGNILGLSTS LHRVGLCGPE  120
ERSFASFATG FTQCDGLVDF IDSGERQFET WHKVNAALRH HAMQPSCRRI YFAGCHEAKY  180
IDYLRSCTIL GGRITLVDAP EVEPEFIRLG LPAKDLPVLF RSMQLEYART PPPEPSESSD  240
TIVRPEDHTS RKEGKEGDSL PCVYFRMGQC KSGEQCKFQH ANVPKAMKSD KILPVELAET  300
PAIISTPQKP QDSDEVDLVL PPIANKKKVN DQKIIIPRLV IPVCGKTALN KEYFAPLLVP  360
ERFTKPGYVG INSNGHRIDP YMPPPSKQAT ADFIRLHSKN HLCNSHNLIG HCEKGSRCKY  420
DHRPISRGVF NMLKRTARSN PCRRKGLCRI LHCNSGHICQ LPDCHRRGGT VKCKMGPEYH  480
LEDNELKTTG YVKGDAKDRE GRAETRSRAS SMACSRASPT PSVSPASNIV KPRQKAQVIT  540
PPGSDDEMPL IDLEDDVDTI TQHPEVLLGP HAHAADTEVL PPDESLL