PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023908938.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 482aa MW: 50910.7 Da PI: 8.0496

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023908938.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.2	2.4e-12	53	78	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG+C yG+rC+F+H++ XP_023908938.1 53 DEADCIYYLRTGFCGYGARCRFNHPR 78 6799********************96 PP
2	zf-CCCH	39.1	1.3e-12	100	124	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCk+G++Ck++H++ XP_023908938.1 100 QPVCQYYMRTGTCKFGASCKYHHPR 124 689********************96 PP
3	zf-CCCH	36.3	9.2e-12	146	170	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++ +tG+Ck+G++CkF+H++ XP_023908938.1 146 EKECSYYVKTGQCKFGATCKFHHPQ 170 689********************97 PP
4	zf-CCCH	36.4	8.8e-12	305	329	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C++++rtG Ck+G++C+++H+ XP_023908938.1 305 GQQDCPYYMRTGDCKFGSSCRYHHP 329 6789********************9 PP
5	zf-CCCH	28.3	3e-09	352	375	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++C ++a+ G Ck+G CkF H+ XP_023908938.1 352 APPCTHYAQRGVCKFGHACKFDHP 375 689********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence
MERYGRHSDG PQPDPSPEWT APGTETGLEE PMWQLGLEGG GGGGTESYPE RPDEADCIYY 60 LRTGFCGYGA RCRFNHPRDR AAVIGAARAG GGEYPERVGQ PVCQYYMRTG TCKFGASCKY 120 HHPRQGGESV TPVSLNYYGY PLRLGEKECS YYVKTGQCKF GATCKFHHPQ PAGLPAVSSL 180 APQVAAVPTP VHAPTLYQSG QSSSQQYGVV LARPPLLSGS YVQNPYPPMI VSPSMVPFPG 240 WSHYPAPPMS PVPSPSTQST VGSGQFYGIT QLSPTATAYT YLPLPSSVGP SGSSQKEHPF 300 PERPGQQDCP YYMRTGDCKF GSSCRYHHPT EFIAPKTNVA LSPLGLPLRP GAPPCTHYAQ 360 RGVCKFGHAC KFDHPVGGTL SYSPSASSLT DVPVAPYPVG SSIGTLAPSS SSSELRPELI 420 SGSSKDSVSS RMSSSMSTSS GSIGSTFSQG GPTPHSTVQQ LAPGSGPSSG SSNGSTEPRT 480 SN

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence

MERYGRHSDG PQPDPSPEWT APGTETGLEE PMWQLGLEGG GGGGTESYPE RPDEADCIYY  60
LRTGFCGYGA RCRFNHPRDR AAVIGAARAG GGEYPERVGQ PVCQYYMRTG TCKFGASCKY  120
HHPRQGGESV TPVSLNYYGY PLRLGEKECS YYVKTGQCKF GATCKFHHPQ PAGLPAVSSL  180
APQVAAVPTP VHAPTLYQSG QSSSQQYGVV LARPPLLSGS YVQNPYPPMI VSPSMVPFPG  240
WSHYPAPPMS PVPSPSTQST VGSGQFYGIT QLSPTATAYT YLPLPSSVGP SGSSQKEHPF  300
PERPGQQDCP YYMRTGDCKF GSSCRYHHPT EFIAPKTNVA LSPLGLPLRP GAPPCTHYAQ  360
RGVCKFGHAC KFDHPVGGTL SYSPSASSLT DVPVAPYPVG SSIGTLAPSS SSSELRPELI  420
SGSSKDSVSS RMSSSMSTSS GSIGSTFSQG GPTPHSTVQQ LAPGSGPSSG SSNGSTEPRT  480
SN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	1e-124	C3H family protein