PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023908887.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

CO-like

Protein Properties

Length: 389aa MW: 43754.8 Da PI: 6.0785

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023908887.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.3	2.6e-07	6	49	2	39
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 ++r C+ ++e + l+C+ ++ lC C e H+ Ht+ XP_023908887.1 6 QKRLCDYCSEATALLYCRADSAKLCFLCDREVHSTnqlfskHTR 49 6789*****************************66788888886 PP
2	zf-B_box	26.1	1.7e-08	50	93	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 r C+ +++ ++++fC + ++ lC++C e H + H+++p XP_023908887.1 50 SRLCDSCDSSPASIFCSTECSVLCQNCDWERH-SlslsqvHNRRP 93 689*****************************.658888888777 PP
3	CCT	41.4	5.1e-15	350	377	16	43
CCT 16 kFeKkirYesRKavAesRpRvKGrFvkq 43 +eK+irYesRK++AesR R+KGrF+k XP_023908887.1 350 MYEKHIRYESRKVRAESRIRIKGRFAKM 377 69************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MSPQIQKRLC DYCSEATALL YCRADSAKLC FLCDREVHST NQLFSKHTRS RLCDSCDSSP 60 ASIFCSTECS VLCQNCDWER HSLSLSQVHN RRPLEGFTGC PSVHELSGIV GFEETGHKAL 120 FLKDESTGDG DDFDGLSDFL VWDTPCAVSL DDLISSTSSE HDFQAMGVPP LPKNRNAACG 180 LYKDEIINQL RELVKLEPNL NCENVDAEPL TGFQPLLSEQ NVQQGDMVTG FAHNAEPFVF 240 PKFEASAFQC CTGSSEAANH FFLPNSSTRS YLEESHVVPD KHADISCSVT HANDGSEGHS 300 RYPVKSETSS AFQRVASHEL NSQERDSALS RYKEKKKTRR YHSPTLCPQM YEKHIRYESR 360 KVRAESRIRI KGRFAKMDTT GETNYYLYM

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MSPQIQKRLC DYCSEATALL YCRADSAKLC FLCDREVHST NQLFSKHTRS RLCDSCDSSP  60
ASIFCSTECS VLCQNCDWER HSLSLSQVHN RRPLEGFTGC PSVHELSGIV GFEETGHKAL  120
FLKDESTGDG DDFDGLSDFL VWDTPCAVSL DDLISSTSSE HDFQAMGVPP LPKNRNAACG  180
LYKDEIINQL RELVKLEPNL NCENVDAEPL TGFQPLLSEQ NVQQGDMVTG FAHNAEPFVF  240
PKFEASAFQC CTGSSEAANH FFLPNSSTRS YLEESHVVPD KHADISCSVT HANDGSEGHS  300
RYPVKSETSS AFQRVASHEL NSQERDSALS RYKEKKKTRR YHSPTLCPQM YEKHIRYESR  360
KVRAESRIRI KGRFAKMDTT GETNYYLYM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47890.1	4e-95	CO-like family protein