PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023908794.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 971aa MW: 108262 Da PI: 7.4917

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023908794.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.3	3.5e-07	4	24	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cg+sF+r ++L+rHi tH XP_023908794.1 4 CTYCGQSFTRDEHLERHILTH 24 *******************99 PP
2	zf-C2H2	15.6	4.7e-05	30	52	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC C++sF r+++L+rH +H XP_023908794.1 30 FKCFTCHMSFARRDLLQRHYTVH 52 89*****************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 971 aa Download sequence
MVFCTYCGQS FTRDEHLERH ILTHTNVKPF KCFTCHMSFA RRDLLQRHYT VHGKNENQEP 60 IPAVNGMIPK SAGRTPIACN NCAKTKTKCD KKFPCSRCAS RNLKCTLRPT RRSTKNVQRM 120 GISLDGAGGA PLHIHPAPAE SAVSSSPPQP KPLKPAMSKN VPDKLPQHPP PPPTPVLDVS 180 PPQAPAQPSP EQKQGPNDMS PPLQTSGGLV QTTPVSVCTD FTGNGVDLSD SDPSPRFMLD 240 WTQMQMPVGY DGVVQPSLVM NTEVPFDPSI MHVQHSVSVH GPVMPEMVNG MTSLITPIES 300 PAIDRSSSDR DFGNSTMGFR QQRNKSVVSK VHLNSDVAPI IAAQDSWSVF RCTPIVPSTS 360 CPKTARLNLE LLEQTLRDHE AWSAWSPPWD ESDNDPEDCV TVMQLHESTR DKLLAISQGF 420 LYKALEIHRQ GSLPQHSSTG LHTPNSHSGF NFVLLPPARV LEFFLRSYAI SFERYFPLTS 480 RGILDANELM HCYNDRAASL LVLMMIAQGA VSVPSRETCM LTAGFAEACR ISLFDLIEKD 540 IIMSGDPIVL HAALLFTVQA AWSGDKWQMD IAMGQRGMYF AMLRHSGVLE NHPTVPPPRD 600 QLPNTDYLWS EWIQNESKSR LVYSWVMVDQ DLALFHDTAP LFSVTEFCVP MPDADRLWKA 660 RTAVEWSSTF EQVHEFAGGY SSVGSGARPL SLRELFRHFL NDEVAARKIE MTPMHMRLLL 720 HPLQSQVCQY RQLLGCFSDA PPIGPPSGRA MSAASTRARF DEVMALCQRW FTLAERYLKT 780 NPTCPMMQTN LIMFHLISLN SVTTFPEVER LARRENFDGS YAQLLWAHQR CLHAPEEAVF 840 HCGQVLRLVR SMPRGVRPPW WAGAIYRASL ILWADSLVAK EVTAPPSSNG GMYPVPGPSF 900 AIDALPADHP LIVRYLNKHE GVPCVTRRDG SQMSIDHSFK VLHHCIELID EGISTRFSGG 960 IRAKLEFLAR T

Sequence ? help Back to Top

Protein Sequence Length: 971 aa Download sequence

MVFCTYCGQS FTRDEHLERH ILTHTNVKPF KCFTCHMSFA RRDLLQRHYT VHGKNENQEP  60
IPAVNGMIPK SAGRTPIACN NCAKTKTKCD KKFPCSRCAS RNLKCTLRPT RRSTKNVQRM  120
GISLDGAGGA PLHIHPAPAE SAVSSSPPQP KPLKPAMSKN VPDKLPQHPP PPPTPVLDVS  180
PPQAPAQPSP EQKQGPNDMS PPLQTSGGLV QTTPVSVCTD FTGNGVDLSD SDPSPRFMLD  240
WTQMQMPVGY DGVVQPSLVM NTEVPFDPSI MHVQHSVSVH GPVMPEMVNG MTSLITPIES  300
PAIDRSSSDR DFGNSTMGFR QQRNKSVVSK VHLNSDVAPI IAAQDSWSVF RCTPIVPSTS  360
CPKTARLNLE LLEQTLRDHE AWSAWSPPWD ESDNDPEDCV TVMQLHESTR DKLLAISQGF  420
LYKALEIHRQ GSLPQHSSTG LHTPNSHSGF NFVLLPPARV LEFFLRSYAI SFERYFPLTS  480
RGILDANELM HCYNDRAASL LVLMMIAQGA VSVPSRETCM LTAGFAEACR ISLFDLIEKD  540
IIMSGDPIVL HAALLFTVQA AWSGDKWQMD IAMGQRGMYF AMLRHSGVLE NHPTVPPPRD  600
QLPNTDYLWS EWIQNESKSR LVYSWVMVDQ DLALFHDTAP LFSVTEFCVP MPDADRLWKA  660
RTAVEWSSTF EQVHEFAGGY SSVGSGARPL SLRELFRHFL NDEVAARKIE MTPMHMRLLL  720
HPLQSQVCQY RQLLGCFSDA PPIGPPSGRA MSAASTRARF DEVMALCQRW FTLAERYLKT  780
NPTCPMMQTN LIMFHLISLN SVTTFPEVER LARRENFDGS YAQLLWAHQR CLHAPEEAVF  840
HCGQVLRLVR SMPRGVRPPW WAGAIYRASL ILWADSLVAK EVTAPPSSNG GMYPVPGPSF  900
AIDALPADHP LIVRYLNKHE GVPCVTRRDG SQMSIDHSFK VLHHCIELID EGISTRFSGG  960
IRAKLEFLAR T