PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023908700.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 620aa    MW: 69079.5 Da    PI: 5.4093
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023908700.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS313.83.7e-962556193374
            GRAS   3 elLlecAeavssgdle.laqalLarlselaspdgdpmqRlaayfteALaarlarsvselyk.al..ppsetseknsseelaalklfsevsPilkf 93 
                     +++++ Ae +++g++  +aq +Larl+++ sp g+p+qR+a+yf+eAL+  l+++ ++ ++ +l  ++ + ++ + + ++ a+k fsevsP+l+f
  XP_023908700.1 255 DQVYQLAELIETGNNPvRAQGILARLNHQLSPIGKPFQRAAFYFKEALQLLLHNTNNTNSNaSLnmSSPPPPPVSLIFKIGAYKSFSEVSPVLQF 349
                     67899*******87766***********************************994443333133114444455569******************* PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +++t+Nqa+lea++g +++ iiDfdi+ G+QW++L+q+La ++++ p l+iT+++sp+++++ el  t+e+L++fA+e+++ fe ++l  ++l+ 
  XP_023908700.1 350 ANFTCNQALLEALDGFDTIRIIDFDIGFGGQWASLMQELALKQGNGPALKITAFVSPSTHDELELGFTQENLKHFATEINLAFELQFLSLESLNY 444
                     ***************************************************************************************94444444 PP

            GRAS 189 l.eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                        +  L+v++ Ea+aVnl +  ++ +  ++sl+     vL +vk+lsPk+vv  ++ +d ++ +F +++++a++ ys l++sl+a    + ++ 
  XP_023908700.1 445 GsWPLPLHVSESEAIAVNLPIGSFSNY--HLSLPL----VLGFVKQLSPKIVVSLDRGCDQTNVPFTDHIIHAVQSYSDLLESLDAV-NVNLDAL 532
                     3124568**************888777..566666....*********************************************665.3566999 PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +k+Er ll++ i++ v    +       +   Wr+ + ++GF+p+++s+++++qa++ll++++++g++ve+++ slvl+W++++L+s+S+Wr
  XP_023908700.1 533 QKIERYLLQPGIEKTVLGGRSP-----DRTPPWRSLFLSSGFSPLTFSNFTESQAECLLQRTPVQGFHVEKKQTSLVLCWQRKELISASVWR 619
                     ****************988776.....7889************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    
MEDWEGVLSE SSSGQEKSIM GLIMGDIEDP SMGLNKLLRQ DIEFNSGFGI IDQAAAFGCL  60
EMSNNLLPSI DPCADFPFNG GGTNATRLGS VSTPNHNPVF SVATSNNLLP VSLSHLPAMF  120
HHQQQQQVQT IEDVDEKPQI FNPPMIQQNQ AQFAQNPALF MPLTYAQLQE HHLVSPPLAK  180
RHNLGGIEPN YQVPKLPFSE PGQELLRRQL QQQQNQLQML PQHIRQRPMM VSKQEVVCNE  240
LASQQQQHSQ QLLFDQVYQL AELIETGNNP VRAQGILARL NHQLSPIGKP FQRAAFYFKE  300
ALQLLLHNTN NTNSNASLNM SSPPPPPVSL IFKIGAYKSF SEVSPVLQFA NFTCNQALLE  360
ALDGFDTIRI IDFDIGFGGQ WASLMQELAL KQGNGPALKI TAFVSPSTHD ELELGFTQEN  420
LKHFATEINL AFELQFLSLE SLNYGSWPLP LHVSESEAIA VNLPIGSFSN YHLSLPLVLG  480
FVKQLSPKIV VSLDRGCDQT NVPFTDHIIH AVQSYSDLLE SLDAVNVNLD ALQKIERYLL  540
QPGIEKTVLG GRSPDRTPPW RSLFLSSGFS PLTFSNFTES QAECLLQRTP VQGFHVEKKQ  600
TSLVLCWQRK ELISASVWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-130GRAS family protein