PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023908490.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

E2F/DP

Protein Properties

Length: 422aa MW: 47253 Da PI: 9.6262

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023908490.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	73.3	2.6e-23	64	129	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++fl+l+ + + + + l+++a++L v +rRRiYDi+NVLe+++++++++kn+++wkg XP_023908490.1 64 RKQKSLGLLCSNFLSLYDRNDVRLIGLDDAASRL---GV--ERRRIYDIVNVLESVGVLARRAKNQYTWKG 129 79***************999********.....****************************98 PP
2	E2F_TDP	77.2	1.6e-24	196	276	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 r+eksL lltq+f+kl+ +s+++ ++l+e+ak L+ + +++k+RR+YDi+NVL++++liek ++k+++rw g XP_023908490.1 196 RREKSLALLTQNFVKLFVCSNAKLISLDEAAKLLLGDahnssIMRTKVRRLYDIANVLSSMKLIEKthttdTRKPAFRWLG 276 689************************************999**********************99*****87 PP

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence
MASSLPSSTS VSPPDSPPLQ QPHRSEQPPP PPPQQQQQPP PMAVPLPSSS TDLDTSSRHH 60 TYSRKQKSLG LLCSNFLSLY DRNDVRLIGL DDAASRLGVE RRRIYDIVNV LESVGVLARR 120 AKNQYTWKGF GAIPIALKEL KEEGMRENTN GFDGNDFAKV SDDEDDDERL SNPSTGSQND 180 KSNPNSSVKC LLKDNRREKS LALLTQNFVK LFVCSNAKLI SLDEAAKLLL GDAHNSSIMR 240 TKVRRLYDIA NVLSSMKLIE KTHTTDTRKP AFRWLGCRGK AENEQAPVDS RKRMFGSDIT 300 NSGFKRSKVE SLFDTNLNQD LKVQKLGKFD SLVHDLDRGN TEHDSKQTSK SYQFGPFAPA 360 SVSKVGAPEN NSVKRVHDWE SLASTHRPQY QNQALKDLFS HYVEAWKSWY SEVAGKKPIQ 420 IS

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence

MASSLPSSTS VSPPDSPPLQ QPHRSEQPPP PPPQQQQQPP PMAVPLPSSS TDLDTSSRHH  60
TYSRKQKSLG LLCSNFLSLY DRNDVRLIGL DDAASRLGVE RRRIYDIVNV LESVGVLARR  120
AKNQYTWKGF GAIPIALKEL KEEGMRENTN GFDGNDFAKV SDDEDDDERL SNPSTGSQND  180
KSNPNSSVKC LLKDNRREKS LALLTQNFVK LFVCSNAKLI SLDEAAKLLL GDAHNSSIMR  240
TKVRRLYDIA NVLSSMKLIE KTHTTDTRKP AFRWLGCRGK AENEQAPVDS RKRMFGSDIT  300
NSGFKRSKVE SLFDTNLNQD LKVQKLGKFD SLVHDLDRGN TEHDSKQTSK SYQFGPFAPA  360
SVSKVGAPEN NSVKRVHDWE SLASTHRPQY QNQALKDLFS HYVEAWKSWY SEVAGKKPIQ  420
IS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48160.2	1e-137	E2F/DP family protein