PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023907690.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family B3
Protein Properties Length: 723aa    MW: 82078.2 Da    PI: 8.4002
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023907690.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.22.2e-1648128690
                     ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     +  +  + + l++p+kf++++g +   s   tl d+sgr W v+l  rk +++ ++ +GW eFvk + + +g  ++F+++g+s+f
  XP_023907690.1  48 MDVSIIQDKKLRVPNKFVRKFGDE--LSSVATLSDPSGRDWLVEL--RKADQKLWFHDGWHEFVKHHCIHAGNLLIFRYEGNSNF 128
                     55666677889**********865..7779***************..*********************************99988 PP
2B3345.1e-113654461094
                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SSSEE..EE CS
              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgrsefelvv 94 
                     v+++++l+lp  f++++g +       t++ ++gr+W++ l   k  +++++++GW +F + + +   g +++Fk++g+s+f+ ++
  XP_023907690.1 365 VFNEKILRLPEIFLQKFGDQ--LASIATVNGPNGRVWQLSL--GKDENGTWFSDGWDKFLDYHSISsNGHIIIFKYEGNSTFNVLF 446
                     678899**********9877..44589999***********..99999*****************989**********99997665 PP
3B350.53.7e-16622717199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ffk+ ++ ++  ++ +++p  fa ++  +  e   + l+d++g+++  ++  r +sg+   ++kGW  F+++++L+egD++vF+l++r++  l v
  XP_023907690.1 622 FFKAILRRHNIYNSFVYVPAGFAMKYL-P-SE--SIALQDSDGKRFPARCFDREGSGAgRSIGKGWATFAREHDLEEGDVLVFELINRETIVLEV 712
                     89999999***************9994.3.23..5***************55555555799*************************999999*** PP

                     EEE-S CS
              B3  95 kvfrk 99 
                     ++fr+
  XP_023907690.1 713 HIFRA 717
                     **996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    
MMINDHGLAL PVTETEQSQS TMAQLVNQSL HSSSPCPNRR ACLFYKLMDV SIIQDKKLRV  60
PNKFVRKFGD ELSSVATLSD PSGRDWLVEL RKADQKLWFH DGWHEFVKHH CIHAGNLLIF  120
RYEGNSNFDI YMFNLTACES CNIPSCSEEP NHVKQCPVSL GKVADNASIE ILGAEEPSHG  180
KHHPVLHGKE VEDDDSIEFL GSFPPRPTSM PRRNNVSDEH VDQQKLYKSC IRTALKNLMH  240
SPDGDNIHLA KDADTLKAKV QSTREIGIQF NESELTRTAG EVGSGYWDEA RQSAKRRKQS  300
TEPKFNVEVG MPGARVSIAV AEKRGRAIRA VLRPRTRRRG VEPADKRERR CKYPTRDPET  360
FFKIVFNEKI LRLPEIFLQK FGDQLASIAT VNGPNGRVWQ LSLGKDENGT WFSDGWDKFL  420
DYHSISSNGH IIIFKYEGNS TFNVLFMFDM TAGKIDYPID NLSSDAEPDS VPNEEEEKDF  480
GYNDVSVSTT YSPSQNSSET WTSDEYFSQG VLKKRNKYTT WTDRKKRHIR KGASSSGQAA  540
TQSCDKCGHH KESEFAKFDK EEAEKTPKEG RFYSSGKRNP KSKYKVDDFS ATSGFSKFSK  600
TIQAAKKRAR KAADMFRSEH PFFKAILRRH NIYNSFVYVP AGFAMKYLPS ESIALQDSDG  660
KRFPARCFDR EGSGAGRSIG KGWATFAREH DLEEGDVLVF ELINRETIVL EVHIFRAIDY  720
SGM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1512531LKKRNKYTTWTDRKKRHIRK
2513526KKRNKYTTWTDRKK
3513527KKRNKYTTWTDRKKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-32B3 family protein