PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023907427.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 741aa MW: 80049.4 Da PI: 6.5078

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023907427.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0013	616	641	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kCp C k ++++ Lk H + H XP_023907427.1 616 FKCPviGCEKAYKNQNGLKYHKQHgH 641 89*******************98766 PP
2	zf-C2H2	13.8	0.00018	677	696	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 y+C+ Cgk++++ Lk H XP_023907427.1 677 YRCEVCGKRYKNLNGLKYHR 696 9******************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 741 aa Download sequence
MGMDDKEGRP RKLRDTTVET ASHEWTRPSA GRKSDPIANL CCAGLGSQAN FPFPPFKSPP 60 ITSLHNAKVA SPLSPPLLQC PSTRESSIDS TPINTPSPGR STSFKSSQPI KQHYSSSNLS 120 SKGHATDDFD GDDILFPLDE RADDHHHEDH GDEDDAGFPL FSHATPRLRT TAATMPGSAS 180 PIDIATTRSN SGSPLNQQSN LTSQLQRPRI DVREDSNSIM NSNGARQDFA VQRGRQESVG 240 MLGTTPYGSR AIPVGDSYRR ESNQISGSLV GGMSWGGISM GSFIRDDILM TGTSPYNFQS 300 PSFHSSSYLP KMEANYMKDY VCCDIRLDSM HELLQHYEEA HAQQPTQTMG RTPKDQQFPS 360 SRAANATSTA AAVQQQSQFQ QPHLQDPQAS RNGNMQAAAS PLFSGQSGDH VAFDNLDDMD 420 MDESAPAPQA PIQGSQFQPQ PQFGRQQPRG PAVNVNLANA FQGPGMQTPT TPRAGQQGMG 480 LPNNPTVSSV NTPTLGTQTA SQQTATPDSS MPGTPAETSD MDYSQLGNLG TFDYSQIMQG 540 NYDMNNLQIS GGNNASCGTI DDPAKRLLSK QGYGNKGFPN PALANNSELA KRIRENQLLN 600 GLAGVGGFVG EEIKPFKCPV IGCEKAYKNQ NGLKYHKQHG HQNQQLKENP DGTFSIVDPT 660 TSIPYPGTVG MEKEKPYRCE VCGKRYKNLN GLKYHRQHSP PCNPELKMNT PNLAGMPNNV 720 QDISVNVAGA GLVGMNDGVG Y

Sequence ? help Back to Top

Protein Sequence Length: 741 aa Download sequence

MGMDDKEGRP RKLRDTTVET ASHEWTRPSA GRKSDPIANL CCAGLGSQAN FPFPPFKSPP  60
ITSLHNAKVA SPLSPPLLQC PSTRESSIDS TPINTPSPGR STSFKSSQPI KQHYSSSNLS  120
SKGHATDDFD GDDILFPLDE RADDHHHEDH GDEDDAGFPL FSHATPRLRT TAATMPGSAS  180
PIDIATTRSN SGSPLNQQSN LTSQLQRPRI DVREDSNSIM NSNGARQDFA VQRGRQESVG  240
MLGTTPYGSR AIPVGDSYRR ESNQISGSLV GGMSWGGISM GSFIRDDILM TGTSPYNFQS  300
PSFHSSSYLP KMEANYMKDY VCCDIRLDSM HELLQHYEEA HAQQPTQTMG RTPKDQQFPS  360
SRAANATSTA AAVQQQSQFQ QPHLQDPQAS RNGNMQAAAS PLFSGQSGDH VAFDNLDDMD  420
MDESAPAPQA PIQGSQFQPQ PQFGRQQPRG PAVNVNLANA FQGPGMQTPT TPRAGQQGMG  480
LPNNPTVSSV NTPTLGTQTA SQQTATPDSS MPGTPAETSD MDYSQLGNLG TFDYSQIMQG  540
NYDMNNLQIS GGNNASCGTI DDPAKRLLSK QGYGNKGFPN PALANNSELA KRIRENQLLN  600
GLAGVGGFVG EEIKPFKCPV IGCEKAYKNQ NGLKYHKQHG HQNQQLKENP DGTFSIVDPT  660
TSIPYPGTVG MEKEKPYRCE VCGKRYKNLN GLKYHRQHSP PCNPELKMNT PNLAGMPNNV  720
QDISVNVAGA GLVGMNDGVG Y