PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023906613.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

HRT-like

Protein Properties

Length: 557aa MW: 61829 Da PI: 9.6824

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023906613.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	42.9	8.1e-14	275	304	2	31
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGv l+dGsvC+r+P + RKR +eH GmRi XP_023906613.1 275 CGVPLGDGSVCRRPPLERRKRRAEHRGMRI 304 *****************************7 PP
2	HRT-like	37.3	4.7e-12	324	347	1	24
HRT-like 1 iCGviledGsvCkrqPvkgRKRCe 24 iCGv l++Gs+C rqP+kgRKRC XP_023906613.1 324 ICGVPLNNGSPCVRQPAKGRKRCD 347 8**********************6 PP
3	HRT-like	44.9	2e-14	394	423	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCGv l+ G C+rqP++gR RCeeHK + XP_023906613.1 394 ICGVELGSGAYCTRQPARGRVRCEEHKSLK 423 8**************************876 PP
4	HRT-like	32.1	1.9e-10	459	486	1	28
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKG 28 +CG++ +dGs C+r+ v+g+KRC++H G XP_023906613.1 459 TCGATCRDGSLCRRKLVEGNKRCWQHGG 486 7*************************65 PP
5	HRT-like	51	2.5e-16	521	550	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 +CG++ dGs C+rqPv+g+KRC++HKGm+ XP_023906613.1 521 TCGATCHDGSLCRRQPVEGNKRCWQHKGMK 550 7****************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence
MIATASGDSL TTMLKREDCN RTKHDSDFSD WKVLVGPSDW EDHSLGKEGA ARYRVHNLPK 60 NSGPGIYELG IAVSQAGLGR EVGKLDPDRL VVVYLGQADN VRTRLQQYGR TGAHLGNSYA 120 NGCANDSKNV SLQKRPGLFN EILSRGYPIV FRWAPMESKR DAEKTEDKLL IRFDYAWNTH 180 SNGARRRDDI LQKLNKIDSG TTRYPNMVRK LLPFSQKQVG IRIKASKLPS PENKLNTYAD 240 LESYNFLSRV FKFGRSQPRL VLDRIGVIED NTSFCGVPLG DGSVCRRPPL ERRKRRAEHR 300 GMRINMSIPK VVAECPVSES FTPICGVPLN NGSPCVRQPA KGRKRCDDDV DLDSSCHDAL 360 SYNQNSSAMC KPGIVQPRVS LEKLVVSKKG YETICGVELG SGAYCTRQPA RGRVRCEEHK 420 SLKVNGLVSK LEAEDKSHVS GLGSKLSTYN DYKYGNSTTC GATCRDGSLC RRKLVEGNKR 480 CWQHGGISAG SSFSGFDSGI NSLTCSKLST YNDYKYGNST TCGATCHDGS LCRRQPVEGN 540 KRCWQHKGMK AGRSFYF

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence

MIATASGDSL TTMLKREDCN RTKHDSDFSD WKVLVGPSDW EDHSLGKEGA ARYRVHNLPK  60
NSGPGIYELG IAVSQAGLGR EVGKLDPDRL VVVYLGQADN VRTRLQQYGR TGAHLGNSYA  120
NGCANDSKNV SLQKRPGLFN EILSRGYPIV FRWAPMESKR DAEKTEDKLL IRFDYAWNTH  180
SNGARRRDDI LQKLNKIDSG TTRYPNMVRK LLPFSQKQVG IRIKASKLPS PENKLNTYAD  240
LESYNFLSRV FKFGRSQPRL VLDRIGVIED NTSFCGVPLG DGSVCRRPPL ERRKRRAEHR  300
GMRINMSIPK VVAECPVSES FTPICGVPLN NGSPCVRQPA KGRKRCDDDV DLDSSCHDAL  360
SYNQNSSAMC KPGIVQPRVS LEKLVVSKKG YETICGVELG SGAYCTRQPA RGRVRCEEHK  420
SLKVNGLVSK LEAEDKSHVS GLGSKLSTYN DYKYGNSTTC GATCRDGSLC RRKLVEGNKR  480
CWQHGGISAG SSFSGFDSGI NSLTCSKLST YNDYKYGNST TCGATCHDGS LCRRQPVEGN  540
KRCWQHKGMK AGRSFYF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	1e-96	HRT-like family protein