PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023906592.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MYB_related
Protein Properties Length: 338aa    MW: 36855.6 Da    PI: 9.7465
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023906592.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.85.1e-13147191347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I+r   ++Rt+ q+ s+ qky
   XP_023906592.1 147 PWTEEEHRTFLIGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKY 191
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    
MGRKCSHCGN IGHNSRTCTY RETFAGGLRL FGVQLDLSSS FALKKSFSVD CLYQPSSSSP  60
TSPSSSLSSS RISIDENSDK TTIGYLSDGL ICRPQERKKG EFGMKIHICY GIVSNFFSRT  120
KSILARVNYR LITTIQGVLV VVCLGVPWTE EEHRTFLIGL EKLGKGDWRG ISRNYVTTRT  180
PTQVASHAQK YFLRQASLNK KKRRSSLFDM VGSSSNMLGH PASSTNSKPS DAVPAEYCKT  240
SSSQHDTTLP LLGHSSSQQD AKSDNQETED PQLPSSSKAN VPVWLYGLVD SQLKTSHAAK  300
PSSSNASPNL ELTLAAPRPL EQNKSSPAPL LFGPITVT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200204KKKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.18e-45MYB_related family protein