PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023905937.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 200aa MW: 22978.8 Da PI: 7.436 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79.2 | 2.9e-25 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien rqvtf+kRr+g+lKKA+ELSvLCdae+ + ifs +gklye + XP_023905937.1 9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELA 58 79*********************************************965 PP | |||||||
2 | K-box | 64.5 | 3.9e-22 | 89 | 173 | 16 | 100 |
K-box 16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++e++ Lk+e+e Lq+ +R + G ++++++l eL Le++Le + +iRs+K+++++e+i+ l++ke l+ +nk+L+ k+ee XP_023905937.1 89 DAKEEIKLLKQEVEILQKGLRYMFGGGVGTMTLDELDVLEKHLEIWICNIRSTKMNIMYEEIQLLRNKEGILKAANKYLQDKIEE 173 6789******************************************************************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence |
MARGKVQLKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGLFIFSA HGKLYELATK 60 GTMQGLIERY MESNRGAQPE PDIETQPLDA KEEIKLLKQE VEILQKGLRY MFGGGVGTMT 120 LDELDVLEKH LEIWICNIRS TKMNIMYEEI QLLRNKEGIL KAANKYLQDK IEENTGMIDF 180 TPNTTNFAYP LTIQNEIFQL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 9e-84 | MIKC_MADS family protein |