PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_023905908.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 201aa MW: 23725.6 Da PI: 6.5592 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.9 | 1.9e-19 | 47 | 101 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++++eq++ Le +F +++++ +++ +LA++lgL+ rqV vWFqNrRa++k+ XP_023905908.1 47 KKRKLSNEQVNLLEYYFCNEHKLESQRKDRLASELGLEPRQVAVWFQNRRARWKN 101 45689************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 115 | 4.6e-37 | 47 | 138 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkr+ls+eqv+lLE F +e+kLe++rK +la+eLgl+prqvavWFqnrRAR+k+++lE++y+ Lkr+++++ e+++Le+ev +L+e+l+e XP_023905908.1 47 KKRKLSNEQVNLLEYYFCNEHKLESQRKDRLASELGLEPRQVAVWFQNRRARWKNQKLEEQYSGLKREHETVLIEKCQLESEVLKLKEQLSE 138 9****************************************************************************************986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 201 aa Download sequence |
MNRQDQMVQF SQLYPDAYTQ IVTQQGESKP RRRRKKNKGG EASELAKKRK LSNEQVNLLE 60 YYFCNEHKLE SQRKDRLASE LGLEPRQVAV WFQNRRARWK NQKLEEQYSG LKREHETVLI 120 EKCQLESEVL KLKEQLSEAE KEIQRLSQNV ETVPTNSTSS SPSVETMAEP FLGEFEMEGY 180 NEAFYTSAFS YGTMDWFNQY I |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 31 | 50 | RRRRKKNKGGEASELAKKRK |
2 | 32 | 51 | RRRRKKNKGGEASELAKKRK |
3 | 33 | 52 | RRRRKKNKGGEASELAKKRK |
4 | 34 | 53 | RRRRKKNKGGEASELAKKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36740.1 | 2e-57 | HD-ZIP family protein |