PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023905586.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 533aa MW: 59281.1 Da PI: 6.5041

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023905586.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21	8.9e-07	273	294	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H XP_023905586.1 273 FCTICGKGFKRDANLRMHMRGH 294 6*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence
MDHKEMPCPT ADTWGKSFSS GNELLKNISS DDTPLTSSQR PQQKWEDPSM LDYNTRIEPP 60 FQDFKQRSET QSSLPCNPNN HNKVTDEDVQ MNGTIQTGKI QDWDPRAMLN NLNFLEQKIH 120 QLQDLVHLIV GRRSLALGRP DELVAQQKQL ITTDLTSIIV QLISTAGSLL PSVKPHSGTT 180 PTGQLGQLGG LFLPSTVGPN GSVQPQNNGG SKVSDQSNQM DITVNCGNEQ NYNMEEHESK 240 DDEDADEGEN LPPGSYEILQ LEKEEILAPH THFCTICGKG FKRDANLRMH MRGHGDEYKT 300 PAALAKPNKE ATSEPMLIKR YSCPYAGCKR NKEHKKFQPL KTILCVKNHY KRTHCDKSYT 360 CSRCNAKKFS VIADLKTHEK HCGKDKWLCS CGTTFSRKDK LFGHIALFQG HTPAIPLEET 420 KGPTVPPDRG EGNEAINKVR SINFNFGSNA SNGNEVQNTA DVKGNIEDPT GYFSPLNFDT 480 WNFGGFHEFP RPPYEDSESS LSFLIPGSCN YTVPGSCNYT QKTGAESSSN NPE

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence

MDHKEMPCPT ADTWGKSFSS GNELLKNISS DDTPLTSSQR PQQKWEDPSM LDYNTRIEPP  60
FQDFKQRSET QSSLPCNPNN HNKVTDEDVQ MNGTIQTGKI QDWDPRAMLN NLNFLEQKIH  120
QLQDLVHLIV GRRSLALGRP DELVAQQKQL ITTDLTSIIV QLISTAGSLL PSVKPHSGTT  180
PTGQLGQLGG LFLPSTVGPN GSVQPQNNGG SKVSDQSNQM DITVNCGNEQ NYNMEEHESK  240
DDEDADEGEN LPPGSYEILQ LEKEEILAPH THFCTICGKG FKRDANLRMH MRGHGDEYKT  300
PAALAKPNKE ATSEPMLIKR YSCPYAGCKR NKEHKKFQPL KTILCVKNHY KRTHCDKSYT  360
CSRCNAKKFS VIADLKTHEK HCGKDKWLCS CGTTFSRKDK LFGHIALFQG HTPAIPLEET  420
KGPTVPPDRG EGNEAINKVR SINFNFGSNA SNGNEVQNTA DVKGNIEDPT GYFSPLNFDT  480
WNFGGFHEFP RPPYEDSESS LSFLIPGSCN YTVPGSCNYT QKTGAESSSN NPE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	0.0	C2H2 family protein