PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023905267.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 758aa MW: 81715.5 Da PI: 7.2802

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023905267.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.7	1.7e-07	291	311	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr+++++GtC + + C+FaH+ XP_023905267.1 291 VCRYWLASGTCAR-ADCRFAHD 311 5**********.*****7 PP
2	zf-CCCH	17.7	6.6e-06	317	337	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++ G C G++C F+H+p XP_023905267.1 317 CKYWLQ-GNCLAGASCVFSHDP 337 ****.***********86 PP

Sequence ? help Back to Top
Protein Sequence Length: 758 aa Download sequence
MVSDKIYELC RPILENEQLG DEDKTDQLEE LLTGPPSSLK GKALEDAVLG VLWQYRTSSD 60 KNTGVSPPAR GATVIRTRSP APWMQRSVSY GSSSSSPRPS STTPYAPPGL TSAFNPLIRT 120 KSSTASPFGS PRASPHLPVA TPVIPHSPRL SSYQFSDVSP STENYGDYGS DTVDWLVNDD 180 ASSSTSFGDS GFATSTEFMS PYTFEMSPYD MLRSILQDTK TDEELEQVLE ANGYDLSQTI 240 NSLMEAQGMG ASTMAAAIQD QQQQRTFLVG KSMSPSSRPV TPAGQQKSPI VCRYWLASGT 300 CARADCRFAH DVQSHVCKYW LQGNCLAGAS CVFSHDPAAL MQQLSIANDG SSGSQQYGPS 360 FALSDYDSFP ALQPTTSNPY EDDGSGLDPA TLNAVLQQSQ SFVQPPPGLF PTFVPTGPRL 420 GSGSGSRPGS RHASRAPTPS QPNFQDDEAF PSLGSAAAAR PGKRHHGKRG GHGHHNNAPP 480 QPSSLADVVR MSPSPGPNSR EVMRRGLRNN RSFTSTLENS SIAMAIAAPV NIPWLETGSG 540 ANAAYMKARQ EAFKHGGLRN KFLQSAAQAW NRNDARGAKA LSLRGQNENN LMREKHREAA 600 QALYEERNKD NSDGGRNKEL YVDLHGLHPE EAVSYLSDCL KDHKSSSRPI YAICGTGHHS 660 KNGKDKVGKA IRAYLNEWRY AFREFSVPGD RNNVGGILGI NPSTYDKEAM KKGLTGSTGD 720 GDSGVGLDEA NKQTSKILLV KEDPRKANVV AAEADSRV

Sequence ? help Back to Top

Protein Sequence Length: 758 aa Download sequence

MVSDKIYELC RPILENEQLG DEDKTDQLEE LLTGPPSSLK GKALEDAVLG VLWQYRTSSD  60
KNTGVSPPAR GATVIRTRSP APWMQRSVSY GSSSSSPRPS STTPYAPPGL TSAFNPLIRT  120
KSSTASPFGS PRASPHLPVA TPVIPHSPRL SSYQFSDVSP STENYGDYGS DTVDWLVNDD  180
ASSSTSFGDS GFATSTEFMS PYTFEMSPYD MLRSILQDTK TDEELEQVLE ANGYDLSQTI  240
NSLMEAQGMG ASTMAAAIQD QQQQRTFLVG KSMSPSSRPV TPAGQQKSPI VCRYWLASGT  300
CARADCRFAH DVQSHVCKYW LQGNCLAGAS CVFSHDPAAL MQQLSIANDG SSGSQQYGPS  360
FALSDYDSFP ALQPTTSNPY EDDGSGLDPA TLNAVLQQSQ SFVQPPPGLF PTFVPTGPRL  420
GSGSGSRPGS RHASRAPTPS QPNFQDDEAF PSLGSAAAAR PGKRHHGKRG GHGHHNNAPP  480
QPSSLADVVR MSPSPGPNSR EVMRRGLRNN RSFTSTLENS SIAMAIAAPV NIPWLETGSG  540
ANAAYMKARQ EAFKHGGLRN KFLQSAAQAW NRNDARGAKA LSLRGQNENN LMREKHREAA  600
QALYEERNKD NSDGGRNKEL YVDLHGLHPE EAVSYLSDCL KDHKSSSRPI YAICGTGHHS  660
KNGKDKVGKA IRAYLNEWRY AFREFSVPGD RNNVGGILGI NPSTYDKEAM KKGLTGSTGD  720
GDSGVGLDEA NKQTSKILLV KEDPRKANVV AAEADSRV