PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023905204.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

HB-PHD

Protein Properties

Length: 1151aa MW: 125740 Da PI: 4.909

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023905204.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	36.7	7.4e-12	972	1013	11	52
HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 +++L + F++n+yp ++++e LA++lgLt ++V+ WF N R XP_023905204.1 972 VTQRLYKSFKENQYPERATKESLAQELGLTFQKVSKWFENAR 1013 6899************************************99 PP
2	PHD	35.6	2e-12	617	672	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg ++++++lCdg C++ fH+ Cl+++l se++p + wlC+ C++k XP_023905204.1 617 FCAKCGLkdLSANNDIILCDGaCDRGFHQHCLEPPLLSEDIPPDdeGWLCPGCDCK 672 699999866677******66***************99999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 1151 aa Download sequence
MNVAEVGHME VSSPAASQTG KSACPEQSES GQIHGSVFSE ASELRHQLGS ETIRNEQGEI 60 SFSEIVTEGS LTEPLGPPPE DVSKSGQAGK DSSPQQITSE NLYDYNSASL SEPSYQKHQL 120 GSELVHNKPA ETSSAVSSCA DKKKLQPSYE NATNSSLAGP LPLDVSESIE TGKILSTQQI 180 ILGQHDSDSG GLLGEPSEGK DQLASGLAQT RSVKTSPAVS SCFADKQLQS SFENVPKSSL 240 TEYLGLPSED VFKSSHAQTS LLPQQTTSEQ VHEFGSANDL VEQKHQPGSE LMQSEPLGTI 300 VAGSSCVNEQ MQSFSDSVAK NSVTDPVELL CENVSRDSQK GKSSCSQPSI SEQTYEFGSG 360 TGESSEQHQL DSEFVHNLPV ETNTVVPTCV VIEQSEPHLE ATKKCSLSEQ TGPPPADSNK 420 DLGTEPLGPP PDDVANNSTL EQLETPPKKT IKNPRRLGRR DKRTPNSLKK KYMLRSLVAS 480 DRVLRSRTPG KPKAPESSNN SAHVSTVEEK KKKIKKRRGK RVVADEFSRI KSRLRYLLNR 540 ISYEQSLIEA YSSEGWRGSS LEKLKPEKEL QRATSEIFRR KLKIRDLFQH IDLLCAEGTL 600 PDSLFDSDGQ IDSEDIFCAK CGLKDLSANN DIILCDGACD RGFHQHCLEP PLLSEDIPPD 660 DEGWLCPGCD CKDDCIDTLN EFQGTNLSIT DSWEKVYPEA AAAAGHKQDH NFGLPSDDSD 720 DNDYNPCEPD DENVEGDESS SDESEYASAA EDLEAPAEEL EAPPKEEQYL GLPSDDSEDD 780 EYDPDAPDLD EKVTKESSSS DFTSDSEDFA AVLDENRPLG GSGGKRSKTG GKKLLSTIDT 840 EPGQDGSAPV SGRRQVERLD YKKLHDEEYG NISTDSSDDE DWNGIAAPKK RKRTTGEVAP 900 MSPNGRTPNG KNNDDIKHNL KETNRTPKRN TRQKANVKDT NNSPMKSPNG SGKSGSSGKR 960 TTSAYKKLGE AVTQRLYKSF KENQYPERAT KESLAQELGL TFQKVSKWFE NARWSFNHSS 1020 HMEAHMANSA SKKDTPLPQK NKKTLEPVPD MFTRDSTCNG APSKALPKDN IIMPEHSGNS 1080 RDSELVTQGS NERKSTTRSS RKRKGRSESD CQASGSDLRI EETKKPPAKS PKANEVQSGG 1140 GMMTRRRKAC T

Sequence ? help Back to Top

Protein Sequence Length: 1151 aa Download sequence

MNVAEVGHME VSSPAASQTG KSACPEQSES GQIHGSVFSE ASELRHQLGS ETIRNEQGEI  60
SFSEIVTEGS LTEPLGPPPE DVSKSGQAGK DSSPQQITSE NLYDYNSASL SEPSYQKHQL  120
GSELVHNKPA ETSSAVSSCA DKKKLQPSYE NATNSSLAGP LPLDVSESIE TGKILSTQQI  180
ILGQHDSDSG GLLGEPSEGK DQLASGLAQT RSVKTSPAVS SCFADKQLQS SFENVPKSSL  240
TEYLGLPSED VFKSSHAQTS LLPQQTTSEQ VHEFGSANDL VEQKHQPGSE LMQSEPLGTI  300
VAGSSCVNEQ MQSFSDSVAK NSVTDPVELL CENVSRDSQK GKSSCSQPSI SEQTYEFGSG  360
TGESSEQHQL DSEFVHNLPV ETNTVVPTCV VIEQSEPHLE ATKKCSLSEQ TGPPPADSNK  420
DLGTEPLGPP PDDVANNSTL EQLETPPKKT IKNPRRLGRR DKRTPNSLKK KYMLRSLVAS  480
DRVLRSRTPG KPKAPESSNN SAHVSTVEEK KKKIKKRRGK RVVADEFSRI KSRLRYLLNR  540
ISYEQSLIEA YSSEGWRGSS LEKLKPEKEL QRATSEIFRR KLKIRDLFQH IDLLCAEGTL  600
PDSLFDSDGQ IDSEDIFCAK CGLKDLSANN DIILCDGACD RGFHQHCLEP PLLSEDIPPD  660
DEGWLCPGCD CKDDCIDTLN EFQGTNLSIT DSWEKVYPEA AAAAGHKQDH NFGLPSDDSD  720
DNDYNPCEPD DENVEGDESS SDESEYASAA EDLEAPAEEL EAPPKEEQYL GLPSDDSEDD  780
EYDPDAPDLD EKVTKESSSS DFTSDSEDFA AVLDENRPLG GSGGKRSKTG GKKLLSTIDT  840
EPGQDGSAPV SGRRQVERLD YKKLHDEEYG NISTDSSDDE DWNGIAAPKK RKRTTGEVAP  900
MSPNGRTPNG KNNDDIKHNL KETNRTPKRN TRQKANVKDT NNSPMKSPNG SGKSGSSGKR  960
TTSAYKKLGE AVTQRLYKSF KENQYPERAT KESLAQELGL TFQKVSKWFE NARWSFNHSS  1020
HMEAHMANSA SKKDTPLPQK NKKTLEPVPD MFTRDSTCNG APSKALPKDN IIMPEHSGNS  1080
RDSELVTQGS NERKSTTRSS RKRKGRSESD CQASGSDLRI EETKKPPAKS PKANEVQSGG  1140
GMMTRRRKAC T

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	455	471	RRLGRRDKRTPNSLKKK
2	515	520	KKRRGK
3	889	894	KKRKRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	1e-98	HB-PHD family protein