PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023904711.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 502aa MW: 54753.5 Da PI: 9.6191

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023904711.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	82	102	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H XP_023904711.1 82 CEICNKGFQRDQNLQLHRRGH 102 *******************88 PP
2	zf-C2H2	12.5	0.00044	156	178	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + XP_023904711.1 156 WKCEKCSKRYAVQSDWKAHSKIC 178 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence
MMNDMLMAEN MSNLTTASGE ISASSSTRNE TTGTLYSQQS SASTNLAPPP KRKRNLPGNP 60 DPEAEVIALS PKSLMATNRF LCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RTSKEVRKKV 120 YICPEPTCVH HDPSRALGDL TGIKKHFFRK HGEKKWKCEK CSKRYAVQSD WKAHSKICGT 180 KEYRCDCGTL FSRRDSFITH RAFCDALAQE SARAITTSAN PLLSSQTPLH SHGIQAALQL 240 KREQEVLNLP SEIPPWLTCP TPSAAGPAGP PSLNLSSSHL FSTNLDPPLV LHHENPTSNP 300 KPNSTTLPPF HPTAASPHMS ATALLQKAAQ MGATMSQPSP SQSMLRPGHH HQAHMSDTHT 360 GLSPTSITSS KAVSGLGLSS REEIGSGFAH SLVSFENKAA ANTVPTGFMQ QQQSPSLLHD 420 MMSSSLPSSS GFEGSSFQEA FNGTGNNNHR GGNEGMTRDF LGLRAFSHKD FINMAAGFEQ 480 MNGNSSSRAY GQHNRNQAPW QG

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence

MMNDMLMAEN MSNLTTASGE ISASSSTRNE TTGTLYSQQS SASTNLAPPP KRKRNLPGNP  60
DPEAEVIALS PKSLMATNRF LCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RTSKEVRKKV  120
YICPEPTCVH HDPSRALGDL TGIKKHFFRK HGEKKWKCEK CSKRYAVQSD WKAHSKICGT  180
KEYRCDCGTL FSRRDSFITH RAFCDALAQE SARAITTSAN PLLSSQTPLH SHGIQAALQL  240
KREQEVLNLP SEIPPWLTCP TPSAAGPAGP PSLNLSSSHL FSTNLDPPLV LHHENPTSNP  300
KPNSTTLPPF HPTAASPHMS ATALLQKAAQ MGATMSQPSP SQSMLRPGHH HQAHMSDTHT  360
GLSPTSITSS KAVSGLGLSS REEIGSGFAH SLVSFENKAA ANTVPTGFMQ QQQSPSLLHD  420
MMSSSLPSSS GFEGSSFQEA FNGTGNNNHR GGNEGMTRDF LGLRAFSHKD FINMAAGFEQ  480
MNGNSSSRAY GQHNRNQAPW QG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	119	KLKQRTSKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-125	C2H2 family protein