PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023904569.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family HD-ZIP
Protein Properties Length: 727aa    MW: 79949.5 Da    PI: 5.8336
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023904569.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.75.4e-2060115156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t+ q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  XP_023904569.1  60 KKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSHELGLEPLQVKFWFQNKRTQMK 115
                     688999***********************************************998 PP
2START217.35e-682494681206
                     HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                     ela +a++elv++a+a+ep+Wv+s    e++n++e+l++f+++ +      ++ea+r+s+vv+m++  lve+l+d++ +W+  +     +a+tle
  XP_023904569.1 249 ELAVAAMEELVRMAQAGEPLWVSSDnstEILNEEEYLRNFPRGIGpkplgLKTEASRESVVVIMNHISLVEILMDVN-RWSSVFCgivsRAMTLE 342
                     57899*************************************999********************************.*****999999****** PP

                     EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
           START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                     v+s+g      galq+m+ae+q++splvp R+ +fvRy++q+ +g+w++vdvS+d+ ++ p    + R++++pSg+li++++ng+ kv+wvehv+
  XP_023904569.1 343 VLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHADGTWAVVDVSLDNLRPSP----ISRSRRRPSGCLIQELPNGYAKVVWVEHVE 433
                     ***********************************************************99....69**************************** PP

                     --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++r +h+++r+lv+sg+a+gak+wvatl+r ce+
  XP_023904569.1 434 VDDRAVHNIYRPLVNSGIAFGAKRWVATLDRKCER 468
                     *********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    
MFQPNMFETH HHLLDMSHKS DDDDDELGKL RDDDFETKSG TETMEPPSGD DQDPNQRSKK  60
KRYHRHTQRQ IQEMEAFFKE CPHPDDKQRK ELSHELGLEP LQVKFWFQNK RTQMKAQHER  120
HENSILKSEN EKLRAENNRY KEALSNATCP NCGGPAALGE MSFDEQHLRI ENARLREEID  180
RISGIAAKYV GKPLTSYSHL SSHVPSRSLD LGVGNFGAQS GFVGEMYGGN DLFRSITGPT  240
DADKPMIVEL AVAAMEELVR MAQAGEPLWV SSDNSTEILN EEEYLRNFPR GIGPKPLGLK  300
TEASRESVVV IMNHISLVEI LMDVNRWSSV FCGIVSRAMT LEVLSTGVAG NYNGALQVMT  360
AEFQVPSPLV PTRENYFVRY CKQHADGTWA VVDVSLDNLR PSPISRSRRR PSGCLIQELP  420
NGYAKVVWVE HVEVDDRAVH NIYRPLVNSG IAFGAKRWVA TLDRKCERLA SSMANNIPAG  480
DLCVITSAEG RKSMLKLAER MAVSFCTGVG ASTAHAWTTL SAAGSDDVRV MTRKSMDDPG  540
RPPGIVLSAA TSFWIPVPPK RVFDFLRDEN SRSEWDILSN GGLVQEMAHI ANGRDPGNCV  600
SLLRVNSANS SQSNMLILQE SCTDSTGSYV IYAPVDIVAM NMVLSGGDPD YVALLPSGFA  660
ILPDGPGLNG GGIVEVGSGG SLLTVAFQIL VDSVPTAKLS LGSVATVNSL IKCTVERIRA  720
AVMCDNA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein