PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023904361.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB_related

Protein Properties

Length: 650aa MW: 71796.3 Da PI: 8.0131

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023904361.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.4	1.4e-07	551	600	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ XP_023904361.1 551 RRPFSVTEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 600 678999******************9988889************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 650 aa Download sequence
MCAFDLLATV AGNMLLEKES SPTSSNTSNE KNRCEFVQKA LENEDKPVKI EPSFQESSDK 60 RVLVSELVHQ AGDQNFSNRE SPLPQNDVHS GLASVVTTDC SEIFVAEKLV NGENNNEMGS 120 FTSNVDLGFS GYRDSSNCKL DCENKLIIKD DLHKTGKVPI GIGADMCSLE DPVVCDGRPP 180 ALVSSDSSVK VPLCGDHIPC SSFPAIRDDV KIVSRDDDEN SSGCTHPSTI AKSIRPVSHI 240 ADRRIRKILA SKYWKVSSKL KEETLSNVDG DLKLICRNRK GYYKRQRSQM NIPFKKRKIF 300 QRSLVSNSDR WISYEGNSHS TEKGINGDDL GSCLKMHGAS GTSSSVVGQH TSVQSRDSYV 360 KLRIKSFRVP ELLIEMSETA TVASLKRAVM EAVTSILGGG LRVGVLLQGK KVRDDNKTLQ 420 QTGIAHDYPL DALGFTLEPN PAQKPPPLCP RDSSCMLPCD TPQPLTRYPL DSTVVHQGDS 480 HASPEPHAAS LGTFIESDHD SAPSPTDTSV DKSTTDSKAL VAVSAMDVDT LAVVPVHRKL 540 KRSEMAQRRI RRPFSVTEVE ALVQAVEKLG TGRWRDVKLR AFDNAKHRTY VDLKDKWKTL 600 VHTARISPQQ RRGEPVPQEL LDRVLCAHAY WSQQQAKQQL KQQPETCLLL

Sequence ? help Back to Top

Protein Sequence Length: 650 aa Download sequence

MCAFDLLATV AGNMLLEKES SPTSSNTSNE KNRCEFVQKA LENEDKPVKI EPSFQESSDK  60
RVLVSELVHQ AGDQNFSNRE SPLPQNDVHS GLASVVTTDC SEIFVAEKLV NGENNNEMGS  120
FTSNVDLGFS GYRDSSNCKL DCENKLIIKD DLHKTGKVPI GIGADMCSLE DPVVCDGRPP  180
ALVSSDSSVK VPLCGDHIPC SSFPAIRDDV KIVSRDDDEN SSGCTHPSTI AKSIRPVSHI  240
ADRRIRKILA SKYWKVSSKL KEETLSNVDG DLKLICRNRK GYYKRQRSQM NIPFKKRKIF  300
QRSLVSNSDR WISYEGNSHS TEKGINGDDL GSCLKMHGAS GTSSSVVGQH TSVQSRDSYV  360
KLRIKSFRVP ELLIEMSETA TVASLKRAVM EAVTSILGGG LRVGVLLQGK KVRDDNKTLQ  420
QTGIAHDYPL DALGFTLEPN PAQKPPPLCP RDSSCMLPCD TPQPLTRYPL DSTVVHQGDS  480
HASPEPHAAS LGTFIESDHD SAPSPTDTSV DKSTTDSKAL VAVSAMDVDT LAVVPVHRKL  540
KRSEMAQRRI RRPFSVTEVE ALVQAVEKLG TGRWRDVKLR AFDNAKHRTY VDLKDKWKTL  600
VHTARISPQQ RRGEPVPQEL LDRVLCAHAY WSQQQAKQQL KQQPETCLLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-125	MYB_related family protein