PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023904341.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 773aa    MW: 86492 Da    PI: 4.8985
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023904341.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS356.83.2e-1094017701373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL+ cA+avs+gd + a++lL++++++++p gd  qR+a++f+++L++rla+   ++ +++  ++ s     e+l+a++++  ++P+ +fs+
  XP_023904341.1 401 LRSLLILCAQAVSTGDGRTANELLKQVRQHSTPFGDGSQRVAHFFANGLETRLAG--ISIGSQMVYKRVS---ALEKLKAYQVYLSACPFKRFSY 490
                     6899**************************************************9..6777777777776...89******************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                        N++Il a+e+++++Hi+Df+i++G+QWp L+q L++Rpeg+p+lRiTg++ p++g   +e +eetg+rL++++++++vpfe+n+++++++e+
  XP_023904341.1 491 GFSNKMILHAAEKATTLHIVDFGIQYGFQWPLLIQLLSKRPEGAPKLRITGIDLPQPGfrPAECIEETGRRLERYCNRFNVPFEYNAIASQNWET 585
                     *********************************************************9*99***************************999**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++eeL+++++E+laVn+++++++llde+v+ +s+r++vL+l+++++P+++v +  + + n++ Fl+rf eal y+sal+d +++++pr++  r 
  XP_023904341.1 586 IRIEELKIERNEVLAVNCAFNMKNLLDETVEGTSPRNAVLNLIRRMKPDIFVNSIVNGSFNAPFFLTRFREALFYFSALYDVFDVTIPRDNPGRL 680
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      +Ere++gr+++nv+aceg er+er et+++ + r+++aGFk++pl+++ ++ +++ +++ + + + ++e+s+++++gWk+r  ++ S+W
  XP_023904341.1 681 IIEREFFGRAAMNVIACEGLERVERPETYKQSQVRISRAGFKKLPLNQELMSVIRAKIKEWYHKDFILDEDSHWMLQGWKGRIFYASSCW 770
                     **************************************************************888************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 773 aa     Download sequence    
MDSSFDFVNG FSTMSPNSED QFSNLINGHT FNQLSPPPTT DLNFLESPNL SSDLDLGPTG  60
FETSITTTVG PEGQPHVVVP PMLQADFTSS PDDSDFSETV LKYINQILME ENIENKPCLF  120
YDPLGLKDTE KSFYDALGQE NPPLPNQNSV ESPVFSSSSG DYGTNSTSSS STVNDSLWQS  180
DLGEHNYQPS LSPPPVLGEH NAVQSNFNPT DQSQFFGNLP NGSVNHFGNG LEVMAHNIFT  240
NSSESILQFR RGLEEASKFL PKSNNLVIDL ESNMVSSSEW KGEDLKVESL VVKGEKESDS  300
PDGSRGRKNR EREEIELEEG RSNKQAAVYV EESEEAELSE MLDKVLLCTD APASMCGDNC  360
EPLQNDASKA LLQTNAQAQG GNGGKGSRNK KQGKKKETVD LRSLLILCAQ AVSTGDGRTA  420
NELLKQVRQH STPFGDGSQR VAHFFANGLE TRLAGISIGS QMVYKRVSAL EKLKAYQVYL  480
SACPFKRFSY GFSNKMILHA AEKATTLHIV DFGIQYGFQW PLLIQLLSKR PEGAPKLRIT  540
GIDLPQPGFR PAECIEETGR RLERYCNRFN VPFEYNAIAS QNWETIRIEE LKIERNEVLA  600
VNCAFNMKNL LDETVEGTSP RNAVLNLIRR MKPDIFVNSI VNGSFNAPFF LTRFREALFY  660
FSALYDVFDV TIPRDNPGRL IIEREFFGRA AMNVIACEGL ERVERPETYK QSQVRISRAG  720
FKKLPLNQEL MSVIRAKIKE WYHKDFILDE DSHWMLQGWK GRIFYASSCW VPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29065.11e-177GRAS family protein