PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023904339.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 773aa    MW: 86736.2 Da    PI: 4.9828
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023904339.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3642.2e-1114017701373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL+ cA+avs+gd + a++lL++++++++p gd  qR+a++f+++L+arla+  +++ +++  ++ s     e+l+a++++  ++P+ k+s+
  XP_023904339.1 401 LRSLLILCAQAVSAGDGRTANELLKQVRQHSTPFGDGSQRVAHFFANGLEARLAG--TSIGSQMVYKRVS---ALEKLKAYQVYLSACPFKKISY 490
                     6899**************************************************9..8999999888888...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +  N++Il a+e+++++Hi+Df+i++G+QWp L+q L++Rpeg+p+lRiTg++ p++g   +e +eetg+rL+k++++++vpfe+n+++++++e+
  XP_023904339.1 491 VFSNKMILHAAEEATTLHIVDFGIQYGFQWPLLIQLLSKRPEGAPKLRITGIDLPQPGfrPAECIEETGRRLEKYCNRFNVPFEYNAIASQNWET 585
                     *********************************************************9*99***************************999**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++eeL+++++E+laVn++++l++llde+v+ +s+rd+vL+l+++++P++++ +  + ++n++ Fl+rf eal ++sal+d ++++lpr++ +r 
  XP_023904339.1 586 IRIEELKIERNEVLAVNCAFRLKNLLDETVEGTSPRDAVLNLIRRMKPDIFINSTVNGSYNAPFFLTRFREALFHFSALYDVFDVTLPRDNPQRL 680
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     k Ere++gre++nvvaceg er+er et+++ + r+++aGFk++pl+++ ++ +++ ++  + + + ++++s+++++gWk+r  ++ S+W
  XP_023904339.1 681 KFEREFFGREAMNVVACEGLERVERPETYKQSQVRISRAGFKQLPLNQELMSVIRAKIKARYHKDFILDDDSHWMLQGWKGRIFYASSCW 770
                     ***********************************************************999888************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 773 aa     Download sequence    
MDSSFDFVNG FSTMSPNSED QFSNLINEHT FNQLSPPPTT DLNFLGSPNL SSDFDLGPTG  60
FEPSITTTVG LEGQPYDPPH VVIPPMLQAD FTSSPDDSDF SETVLKYINQ ILMEENIENK  120
PCMFYDPLGL KDTEKSFYDA LGKKNPPLPN QNSVESPLFS SSSGDYGTNS TSSSSTVNDS  180
LWQSDLGEHN YQPSLSPPPV LGEHNAIQSN FNPTDQSQFF GNLPTGSVNH FGDGLEVMAQ  240
NFFTNSESIL QFRRGLEEAS KFLPKSNNLV IDLESNMVSS SEWKGEDLKV ESLVVKGEKE  300
SDSPDGSRGR KNREREETEL EEGRSNKQTA VYVEEDELSD MFDKVLLCTD APASMCGENC  360
EPLQNDASKA SLHTTGQAQG ANSGKGSRNK KQSKKKETVD LRSLLILCAQ AVSAGDGRTA  420
NELLKQVRQH STPFGDGSQR VAHFFANGLE ARLAGTSIGS QMVYKRVSAL EKLKAYQVYL  480
SACPFKKISY VFSNKMILHA AEEATTLHIV DFGIQYGFQW PLLIQLLSKR PEGAPKLRIT  540
GIDLPQPGFR PAECIEETGR RLEKYCNRFN VPFEYNAIAS QNWETIRIEE LKIERNEVLA  600
VNCAFRLKNL LDETVEGTSP RDAVLNLIRR MKPDIFINST VNGSYNAPFF LTRFREALFH  660
FSALYDVFDV TLPRDNPQRL KFEREFFGRE AMNVVACEGL ERVERPETYK QSQVRISRAG  720
FKQLPLNQEL MSVIRAKIKA RYHKDFILDD DSHWMLQGWK GRIFYASSCW VPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein