PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023904296.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB_related

Protein Properties

Length: 876aa MW: 98028.4 Da PI: 4.7934

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023904296.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31	6e-10	812	866	1	46
TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 r +WT+eE+e+l+++v++l ++ Wk I + g Rt ++k++w++ XP_023904296.1 812 RVPWTAEEEEKLKEGVQKLANPndsniPWKNILEFGGdvfrSDRTTIDLKDKWRN 866 789************************************99*********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 876 aa Download sequence
MDEDLSNRAS ILPWIWVMEV LARFKQVDVS VLHDLIELVP ELPDDLGKNM REMLALRCLE 60 FLFDPSNGVR NGDCSTLDSK VGLDFSKSCE DVLQHILHET SLSDLKIAGP ELLKWDVRPF 120 IIHKRAGMPK LALQQLKDSI LEGIHPYADS LKERSGLTLT SAGDGIPVNN GNHNALTHRV 180 NGSCFDTQHM GAKGNLIPTM LENGNQLLQK DPCNRNLLLS KRGRNRSATE NMVGDFHENQ 240 NTLNDGDNLH INAKKQKQCP SSSIQSIEEN PVPLRGTEPL EDSSARVMPV SEREGCDLAK 300 DQIGTLKEGR VLEDGHDEHT VSVRCGHNSD DEFHHNQSET SDNATMICQG PSADEPCKDI 360 AVNKDIDDSE HCVEPRPLIG PYIATMMVQE MSVDEVKDDS EHCAEPRTSS GPLLNKTLED 420 EFHHNQSGTL DSATIMLQDP STDKPFQHVF VNEDKNDGEH CVEPRPFTGS FLPCSASVMV 480 QDISEVKPGQ KISVEEIKDD SDNCAEPRTS SVPLLNKTLE NESQCNCGHD FQLKAPCAAS 540 LDGSQQKIIT NEAEEVMDLC CEAETSNDSD ECHNYKIDVS KKKLEFLRSQ CKYSHDSLAS 600 AGCTEHNFCV RCNEGGQLLV CNTRNCPLVV HENCLGFSSR FDGNGNFYCP FCVYSLAISE 660 YLEAKKKASL ADTELNKFIH MDLKHQPKEL MQQAEPSASS DNVNATLREE EATVTTGTLN 720 EFTNQGQAHH EENTDVIPFN QRQAEEGFHQ EVSGQQIADP PREPVWALNI DGEGTSGDET 780 NKSIIFNYSI RLRRRESYHT YPVLPPLLRR KRVPWTAEEE EKLKEGVQKL ANPNDSNIPW 840 KNILEFGGDV FRSDRTTIDL KDKWRNMCKR NPKSKQ

Sequence ? help Back to Top

Protein Sequence Length: 876 aa Download sequence

MDEDLSNRAS ILPWIWVMEV LARFKQVDVS VLHDLIELVP ELPDDLGKNM REMLALRCLE  60
FLFDPSNGVR NGDCSTLDSK VGLDFSKSCE DVLQHILHET SLSDLKIAGP ELLKWDVRPF  120
IIHKRAGMPK LALQQLKDSI LEGIHPYADS LKERSGLTLT SAGDGIPVNN GNHNALTHRV  180
NGSCFDTQHM GAKGNLIPTM LENGNQLLQK DPCNRNLLLS KRGRNRSATE NMVGDFHENQ  240
NTLNDGDNLH INAKKQKQCP SSSIQSIEEN PVPLRGTEPL EDSSARVMPV SEREGCDLAK  300
DQIGTLKEGR VLEDGHDEHT VSVRCGHNSD DEFHHNQSET SDNATMICQG PSADEPCKDI  360
AVNKDIDDSE HCVEPRPLIG PYIATMMVQE MSVDEVKDDS EHCAEPRTSS GPLLNKTLED  420
EFHHNQSGTL DSATIMLQDP STDKPFQHVF VNEDKNDGEH CVEPRPFTGS FLPCSASVMV  480
QDISEVKPGQ KISVEEIKDD SDNCAEPRTS SVPLLNKTLE NESQCNCGHD FQLKAPCAAS  540
LDGSQQKIIT NEAEEVMDLC CEAETSNDSD ECHNYKIDVS KKKLEFLRSQ CKYSHDSLAS  600
AGCTEHNFCV RCNEGGQLLV CNTRNCPLVV HENCLGFSSR FDGNGNFYCP FCVYSLAISE  660
YLEAKKKASL ADTELNKFIH MDLKHQPKEL MQQAEPSASS DNVNATLREE EATVTTGTLN  720
EFTNQGQAHH EENTDVIPFN QRQAEEGFHQ EVSGQQIADP PREPVWALNI DGEGTSGDET  780
NKSIIFNYSI RLRRRESYHT YPVLPPLLRR KRVPWTAEEE EKLKEGVQKL ANPNDSNIPW  840
KNILEFGGDV FRSDRTTIDL KDKWRNMCKR NPKSKQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	793	812	RRRESYHTYPVLPPLLRRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58340.2	4e-07	MYB_related family protein