PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023903644.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family ARR-B
Protein Properties Length: 339aa    MW: 38490.6 Da    PI: 5.2427
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023903644.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like66.25.7e-2198155254
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkv.....kgLtlehvkSHLQkYR 54 
                     +r+ Wt++ He+Fve v++LGG+++AtPk+il+l++      +++ +e++ SHLQkYR
  XP_023903644.1  98 QRMSWTSDSHEKFVESVKKLGGIDNATPKKILQLLQSnfkgfEDVDREKISSHLQKYR 155
                     8*********************************9753322267899*********** PP
2Myb_DNA-binding22.52.6e-0799154147
                      TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT........TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmg........kgRtlkqcksrwqky 47 
                      r++WT + +e++v+ vk+lGg    t+k+I + ++            ++ + s++qky
   XP_023903644.1  99 RMSWTSDSHEKFVESVKKLGGIdnaTPKKILQLLQsnfkgfedV--DREKISSHLQKY 154
                      789*****************88************9888666443..334477777776 PP
3Response_reg23.92.1e-0966744107
                     ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHH CS
    Response_reg  44 pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeel 107
                     +++i++   + g++ +ell+  re +  lp+iv +  ++++ +++ l++Ga d+l Kp++++ l
  XP_023903644.1   6 FHIIIIEQCLLGVNEFELLRIVREID--LPVIVTSEDDKPDIVQRSLNYGACDYLLKPIPMSVL 67 
                     899999999999999*****999988..******************************998766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    
MEGSVFHIII IEQCLLGVNE FELLRIVREI DLPVIVTSED DKPDIVQRSL NYGACDYLLK  60
PIPMSVLKMV WKYMFLKKDN KWAQVQQLTN NVSRVRNQRM SWTSDSHEKF VESVKKLGGI  120
DNATPKKILQ LLQSNFKGFE DVDREKISSH LQKYRDSIKR KAQLHMLGYR DKDGTSSEHI  180
QSIYQMKEHP PMTLVDQVLK TMVANEPDIL LQQQQAPAAK NTQGFRSVTL PFESNLPTIG  240
GSTSCGNQSN ALMTQMDEAF SSEQMRNEFT GGQPFVYENF LNDIDASTND ISGDPDFFSI  300
NAPLLCPRHI DHGELGFSSD GIFENFTGDV TACEHFNNL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62670.14e-24ARR-B family protein