PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023903430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 213aa MW: 24427.2 Da PI: 10.1824 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.3 | 8.4e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ks rqvtfskRr g++KKA ELSvLCd+e+a+ +fss+gklye+ss XP_023903430.1 9 KRIEDKSSRQVTFSKRRSGLIKKARELSVLCDVEIALCVFSSRGKLYEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 53 | 1.5e-18 | 85 | 177 | 7 | 99 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++ e+++ e + e L + e L+ q +l G ++e+Ls+ +L +Le+q + +l++ Rs+K++l+le+i l +ke++l+ee+k L++k+ XP_023903430.1 85 NDIEKNHLEDASLEDVSLPSHAELLEIGQSQLEGPNIEQLSVTDLVKLERQFNAALSQTRSRKTQLMLESIMSLHEKERMLREEKKLLQRKIR 177 55889999999999999**************************************************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence |
MGRKKVVLKR IEDKSSRQVT FSKRRSGLIK KARELSVLCD VEIALCVFSS RGKLYEFSSG 60 NSLSKILDRY QSRIQVEMKE SKGLNDIEKN HLEDASLEDV SLPSHAELLE IGQSQLEGPN 120 IEQLSVTDLV KLERQFNAAL SQTRSRKTQL MLESIMSLHE KERMLREEKK LLQRKIRATR 180 DTKDRTEVVL GLIKHSNHQL AHPPQLETLS LLP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10140.2 | 7e-46 | MIKC_MADS family protein |