PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023902312.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family LFY
Protein Properties Length: 383aa    MW: 43236.6 Da    PI: 7.6238
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023902312.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY641.51.3e-19513691386
         FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslse 95 
                     mdp+ f+aslfkwdpr ++ a+++rlle  a   +p +a  ++  r+l +leelf+ayG+ry+t+a+iaelGftv+tL+dmkd+eldd+m+sls+
  XP_023902312.1   1 MDPDPFTASLFKWDPRGVVPAATNRLLEAVA---PP-QAVYSVRPRELGGLEELFQAYGIRYYTAARIAELGFTVNTLLDMKDNELDDMMNSLSQ 91 
                     9***************999888888865543...33.345777888999********************************************** PP

         FLO_LFY  96 ifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeet.aldalsqeglseepvqeekeaagsggeglgeaelvaaeekkseeekkkas 189
                     ifr+dllvGeryGikaavraerrrl+ee+  ++rr+lls d++t +ldalsqeglseepvq+ekea+gsgg+g  ++e+va         ++k+ 
  XP_023902312.1  92 IFRWDLLVGERYGIKAAVRAERRRLDEED--SRRRHLLSPDTTTnTLDALSQEGLSEEPVQQEKEAVGSGGGG--TWEAVAGGG------RRKQ- 175
                     ***************************88..899999999987779***********************9999..999999873......2333. PP

         FLO_LFY 190 kkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnq 284
                        ++rk +++++  +++d+e   d+d++ +g+ g+erqrehPfivtepgevargkknGLDYLf+LyeqCr+fL+qvq+iakerGekcPtkvtnq
  XP_023902312.1 176 ---RRRKGQRKVVDVDHDDNELGADHDDDMNGNVGSERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRDFLIQVQNIAKERGEKCPTKVTNQ 267
                     ...2333333434445566667778888889999************************************************************* PP

         FLO_LFY 285 vfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLCh 379
                     vfr+akkagasyinkPkmrhYvhCYalhcLdeeasnalrr fkergenvGawrqacykplvaiaarqgwdida+fnahprLs+WYvPtkLrqLCh
  XP_023902312.1 268 VFRFAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRRGFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLSVWYVPTKLRQLCH 362
                     *********************************************************************************************** PP

         FLO_LFY 380 lerskas 386
                     +er++a+
  XP_023902312.1 363 AERNHAT 369
                     ***9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    
MDPDPFTASL FKWDPRGVVP AATNRLLEAV APPQAVYSVR PRELGGLEEL FQAYGIRYYT  60
AARIAELGFT VNTLLDMKDN ELDDMMNSLS QIFRWDLLVG ERYGIKAAVR AERRRLDEED  120
SRRRHLLSPD TTTNTLDALS QEGLSEEPVQ QEKEAVGSGG GGTWEAVAGG GRRKQRRRKG  180
QRKVVDVDHD DNELGADHDD DMNGNVGSER QREHPFIVTE PGEVARGKKN GLDYLFHLYE  240
QCRDFLIQVQ NIAKERGEKC PTKVTNQVFR FAKKAGASYI NKPKMRHYVH CYALHCLDEE  300
ASNALRRGFK ERGENVGAWR QACYKPLVAI AARQGWDIDA IFNAHPRLSV WYVPTKLRQL  360
CHAERNHATA SSSVSGGADH MPF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172179RRKQRRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-157LFY family protein