PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023900382.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

GRF

Protein Properties

Length: 397aa MW: 43520.4 Da PI: 8.4895

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023900382.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	80.6	1.5e-25	153	196	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e XP_023900382.1 153 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHVHRGRNRSRKPVE 196 79***************************************987 PP
2	QLQ	51.8	2.5e-18	82	118	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+F+ aQ+q+L+ Q+l+y+y++a+ vPpeLlq+i+k XP_023900382.1 82 SYFSLAQWQELELQALIYRYMLAGTAVPPELLQPIKK 118 79*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence
MDFNLKQWRN HQHESEQQQQ QHSVKIPKLL LEPHQQQQQQ PQIQASASAL PLFVPEPNSK 60 ISSLSAYPDS TLATTRFPRM SSYFSLAQWQ ELELQALIYR YMLAGTAVPP ELLQPIKKSL 120 HISPYFLHHP LQHYPHFQPA LFQSGYWGRG AMDPEPGRCR RTDGKKWRCS RDVVAGQKYC 180 ERHVHRGRNR SRKPVEIPTP MTSVTSTTTT TIAGCGGTFK ATTAVASGTP FALSGPSPSI 240 DLLHLNQSAI GSKTANKSGL FESQHEVSAD GKSDGHVLRH FFDDWPRSFQ ESDNAGSNSS 300 PMNSATCLSI SMPGNSSSDV SLKLSTGVGE EPGSRDSNAE SEQPQLNWAS GWATNHVSSM 360 GGPLAEALRS STSNSSPTSV LHQLPRGSAS ETSFVST

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence

MDFNLKQWRN HQHESEQQQQ QHSVKIPKLL LEPHQQQQQQ PQIQASASAL PLFVPEPNSK  60
ISSLSAYPDS TLATTRFPRM SSYFSLAQWQ ELELQALIYR YMLAGTAVPP ELLQPIKKSL  120
HISPYFLHHP LQHYPHFQPA LFQSGYWGRG AMDPEPGRCR RTDGKKWRCS RDVVAGQKYC  180
ERHVHRGRNR SRKPVEIPTP MTSVTSTTTT TIAGCGGTFK ATTAVASGTP FALSGPSPSI  240
DLLHLNQSAI GSKTANKSGL FESQHEVSAD GKSDGHVLRH FFDDWPRSFQ ESDNAGSNSS  300
PMNSATCLSI SMPGNSSSDV SLKLSTGVGE EPGSRDSNAE SEQPQLNWAS GWATNHVSSM  360
GGPLAEALRS STSNSSPTSV LHQLPRGSAS ETSFVST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	2e-83	GRF family protein