PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023900072.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

NF-X1

Protein Properties

Length: 401aa MW: 44467 Da PI: 8.1486

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023900072.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	17.7	8.1e-06	187	205	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG H C lCH+GpCp+Cp+ XP_023900072.1 187 CG-HNCLLLCHPGPCPSCPK 205 .*************96 PP
2	zf-NF-X1	24.3	6.8e-08	239	256	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG HkC ++CH GpCppC XP_023900072.1 239 CGVHKCAQPCHDGPCPPC 256 ****************** PP
3	zf-NF-X1	16.1	2.5e-05	292	312	1	20
zf-NF-X1 1 CGkHkCqklCHe.GpCppCpq 20 CGkH+C+k CHe G C++Cp+ XP_023900072.1 292 CGKHRCEKGCHEiGGCGECPL 312 *******************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence
MTSANDDHRH RQFSDSDSDS DHGHTGSSSL LHADLSNSIF KSYLEFTNQS SPSASDLSKI 60 QSFLTSSSSG ALSCLICLER IKPSHPTWSC SSLCYAVFHL ACIQSWSRQS SDLSAARATT 120 RLPISSQHAS EISTWNCPKC RVQYSRSQIP KHYHCFCGKL QDPPSDDPWV LPHSCGEVCN 180 RPLKHNCGHN CLLLCHPGPC PSCPKLIKSK CYCGAVSEVR RCGFKNFSCN NLCSKRLQCG 240 VHKCAQPCHD GPCPPCAARA VYACRCGKER QERECHDREF RCEGACDRAL KCGKHRCEKG 300 CHEIGGCGEC PLQGKRACPC GKRVYEGMPC DVTTPLCGAT CDKTLSCGLH RCHERCHRGT 360 CMETCRIVVI KSCRCGSLRK EVFLLLLCLL FEVLLNFRNE Q

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence

MTSANDDHRH RQFSDSDSDS DHGHTGSSSL LHADLSNSIF KSYLEFTNQS SPSASDLSKI  60
QSFLTSSSSG ALSCLICLER IKPSHPTWSC SSLCYAVFHL ACIQSWSRQS SDLSAARATT  120
RLPISSQHAS EISTWNCPKC RVQYSRSQIP KHYHCFCGKL QDPPSDDPWV LPHSCGEVCN  180
RPLKHNCGHN CLLLCHPGPC PSCPKLIKSK CYCGAVSEVR RCGFKNFSCN NLCSKRLQCG  240
VHKCAQPCHD GPCPPCAARA VYACRCGKER QERECHDREF RCEGACDRAL KCGKHRCEKG  300
CHEIGGCGEC PLQGKRACPC GKRVYEGMPC DVTTPLCGAT CDKTLSCGLH RCHERCHRGT  360
CMETCRIVVI KSCRCGSLRK EVFLLLLCLL FEVLLNFRNE Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	1e-143	NF-X1 family protein